miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 167611 0.68 0.477629
Target:  5'- --gGGGGCCUCGGGGGCggAGggGGGg -3'
miRNA:   3'- cugUCCUGGGGCCCCCGagUCggUCC- -5'
28883 5' -63.5 NC_006146.1 + 51582 0.68 0.486575
Target:  5'- cGGgAGGGgCCCGGGGG---AGCCAGa -3'
miRNA:   3'- -CUgUCCUgGGGCCCCCgagUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 108994 0.68 0.477629
Target:  5'- --aGGGACCCaCGcucaGGGGCUUguAGuCCAGGg -3'
miRNA:   3'- cugUCCUGGG-GC----CCCCGAG--UC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 137208 0.68 0.513871
Target:  5'- -cCGGGcacACCCCGGGGaggaAGCCGGGu -3'
miRNA:   3'- cuGUCC---UGGGGCCCCcgagUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 62507 0.68 0.459986
Target:  5'- gGACAGGugUuuuuggugcugcCCGGGGGCUUuguuauuaaaGGCCAauuGGa -3'
miRNA:   3'- -CUGUCCugG------------GGCCCCCGAG----------UCGGU---CC- -5'
28883 5' -63.5 NC_006146.1 + 68149 0.68 0.50836
Target:  5'- cGCAGGAaaggggcugccuccuCCCCGGGcaGGCgCAGCguCAGGa -3'
miRNA:   3'- cUGUCCU---------------GGGGCCC--CCGaGUCG--GUCC- -5'
28883 5' -63.5 NC_006146.1 + 169475 0.68 0.477629
Target:  5'- --gGGGGCCUCGGGGGCggAGggGGGg -3'
miRNA:   3'- cugUCCUGGGGCCCCCGagUCggUCC- -5'
28883 5' -63.5 NC_006146.1 + 168543 0.68 0.477629
Target:  5'- --gGGGGCCUCGGGGGCggAGggGGGg -3'
miRNA:   3'- cugUCCUGGGGCCCCCGagUCggUCC- -5'
28883 5' -63.5 NC_006146.1 + 170406 0.68 0.477629
Target:  5'- --gGGGGCCUCGGGGGCggAGggGGGg -3'
miRNA:   3'- cugUCCUGGGGCCCCCGagUCggUCC- -5'
28883 5' -63.5 NC_006146.1 + 44365 0.68 0.486575
Target:  5'- gGACgAGGugccagacccccGCCCgGGGGGCguguggGGCCGGGc -3'
miRNA:   3'- -CUG-UCC------------UGGGgCCCCCGag----UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 139133 0.68 0.486575
Target:  5'- gGGCuguGGGCCgaaCGGGGGCUCccgucccCCGGGg -3'
miRNA:   3'- -CUGu--CCUGGg--GCCCCCGAGuc-----GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 55282 0.68 0.4956
Target:  5'- --uGGGGCUCgCGGuGGGCagCAGCCGGa -3'
miRNA:   3'- cugUCCUGGG-GCC-CCCGa-GUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 170526 0.68 0.4956
Target:  5'- gGGCGGGGCCUgaGGGGGCgCGGCg--- -3'
miRNA:   3'- -CUGUCCUGGGg-CCCCCGaGUCGgucc -5'
28883 5' -63.5 NC_006146.1 + 155861 0.68 0.5047
Target:  5'- cGCAGG--CCCGGcGGGCccuGGCCAGGc -3'
miRNA:   3'- cUGUCCugGGGCC-CCCGag-UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 60139 0.68 0.513871
Target:  5'- --aGGGACCUggugGGGGGUgUguGCCAGGg -3'
miRNA:   3'- cugUCCUGGGg---CCCCCG-AguCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 63365 0.68 0.4956
Target:  5'- cACAGGGCCCUccuGGGGCUCAuguuuaaaCCAGa -3'
miRNA:   3'- cUGUCCUGGGGc--CCCCGAGUc-------GGUCc -5'
28883 5' -63.5 NC_006146.1 + 131572 0.68 0.5047
Target:  5'- cGCAGGAgauUCCCGGGgaGGC-CAGCCGa- -3'
miRNA:   3'- cUGUCCU---GGGGCCC--CCGaGUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 123336 0.68 0.512031
Target:  5'- uGCGGGGCCgucaggggucucgCCGaGGGaGCUCuggcgcuGGCCGGGg -3'
miRNA:   3'- cUGUCCUGG-------------GGC-CCC-CGAG-------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 135610 0.68 0.513871
Target:  5'- aGACAGGcaACCCC-GGGGCUgA-UCAGGu -3'
miRNA:   3'- -CUGUCC--UGGGGcCCCCGAgUcGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 116252 0.68 0.513871
Target:  5'- cGACGGGGCCCCuccaaugcccGGGGaGCcacCGGaCCAGa -3'
miRNA:   3'- -CUGUCCUGGGG----------CCCC-CGa--GUC-GGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.