miRNA display CGI


Results 81 - 100 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 63365 0.68 0.4956
Target:  5'- cACAGGGCCCUccuGGGGCUCAuguuuaaaCCAGa -3'
miRNA:   3'- cUGUCCUGGGGc--CCCCGAGUc-------GGUCc -5'
28883 5' -63.5 NC_006146.1 + 51582 0.68 0.486575
Target:  5'- cGGgAGGGgCCCGGGGG---AGCCAGa -3'
miRNA:   3'- -CUgUCCUgGGGCCCCCgagUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 108994 0.68 0.477629
Target:  5'- --aGGGACCCaCGcucaGGGGCUUguAGuCCAGGg -3'
miRNA:   3'- cugUCCUGGG-GC----CCCCGAG--UC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 76915 0.68 0.459986
Target:  5'- --gAGGugaCCGcGGGGCUgCAGCCGGGu -3'
miRNA:   3'- cugUCCuggGGC-CCCCGA-GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 157581 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 151425 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 32930 0.67 0.570158
Target:  5'- cGCcGGcCCCCGGGaGGCcCGGCCGc- -3'
miRNA:   3'- cUGuCCuGGGGCCC-CCGaGUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 33195 0.67 0.541772
Target:  5'- -cCGGGcacCCCCGGGGGga-GGCCGGa -3'
miRNA:   3'- cuGUCCu--GGGGCCCCCgagUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 154503 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 148347 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 141922 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 145000 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 148078 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 151156 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 154234 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 157312 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 34077 0.67 0.522183
Target:  5'- cACGGGGCCgggggucCCGGGGGg-CAGCCGc- -3'
miRNA:   3'- cUGUCCUGG-------GGCCCCCgaGUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 145269 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 142191 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 24187 0.67 0.551187
Target:  5'- gGACAGGGCagaGGaGGGCUgGGCCugcgAGGu -3'
miRNA:   3'- -CUGUCCUGgggCC-CCCGAgUCGG----UCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.