Results 101 - 120 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 170169 | 0.67 | 0.541772 |
Target: 5'- cGGCcgGGGGCUgaGGGGGCUCccgaGGgCGGGg -3' miRNA: 3'- -CUG--UCCUGGggCCCCCGAG----UCgGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 44766 | 0.67 | 0.551187 |
Target: 5'- -uCGGGG-CCCGGcGGGCggggaacccaGGCCGGGg -3' miRNA: 3'- cuGUCCUgGGGCC-CCCGag--------UCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 94943 | 0.67 | 0.56065 |
Target: 5'- gGACGuGGCCgCUgcgguagagGGGGGUgugCAGCCAGGc -3' miRNA: 3'- -CUGUcCUGG-GG---------CCCCCGa--GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 33195 | 0.67 | 0.541772 |
Target: 5'- -cCGGGcacCCCCGGGGGga-GGCCGGa -3' miRNA: 3'- cuGUCCu--GGGGCCCCCgagUCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 24187 | 0.67 | 0.551187 |
Target: 5'- gGACAGGGCagaGGaGGGCUgGGCCugcgAGGu -3' miRNA: 3'- -CUGUCCUGgggCC-CCCGAgUCGG----UCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 142191 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 145269 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 148347 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 151425 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 154503 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 157581 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 141922 | 0.67 | 0.56065 |
Target: 5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3' miRNA: 3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 145000 | 0.67 | 0.56065 |
Target: 5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3' miRNA: 3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 148078 | 0.67 | 0.56065 |
Target: 5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3' miRNA: 3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 154234 | 0.67 | 0.56065 |
Target: 5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3' miRNA: 3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 157312 | 0.67 | 0.56065 |
Target: 5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3' miRNA: 3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 32930 | 0.67 | 0.570158 |
Target: 5'- cGCcGGcCCCCGGGaGGCcCGGCCGc- -3' miRNA: 3'- cUGuCCuGGGGCCC-CCGaGUCGGUcc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 169995 | 0.67 | 0.56065 |
Target: 5'- -cCGGGGuCCCgGGGGGCggcgcgCGGCCu-- -3' miRNA: 3'- cuGUCCU-GGGgCCCCCGa-----GUCGGucc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 167199 | 0.67 | 0.56065 |
Target: 5'- -cCGGGGuCCCgGGGGGCggcgcgCGGCCu-- -3' miRNA: 3'- cuGUCCU-GGGgCCCCCGa-----GUCGGucc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 167374 | 0.67 | 0.541772 |
Target: 5'- cGGCcgGGGGCUgaGGGGGCUCccgaGGgCGGGg -3' miRNA: 3'- -CUG--UCCUGGggCCCCCGAG----UCgGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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