Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 137208 | 0.68 | 0.513871 |
Target: 5'- -cCGGGcacACCCCGGGGaggaAGCCGGGu -3' miRNA: 3'- cuGUCC---UGGGGCCCCcgagUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 135610 | 0.68 | 0.513871 |
Target: 5'- aGACAGGcaACCCC-GGGGCUgA-UCAGGu -3' miRNA: 3'- -CUGUCC--UGGGGcCCCCGAgUcGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 116252 | 0.68 | 0.513871 |
Target: 5'- cGACGGGGCCCCuccaaugcccGGGGaGCcacCGGaCCAGa -3' miRNA: 3'- -CUGUCCUGGGG----------CCCC-CGa--GUC-GGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 60139 | 0.68 | 0.513871 |
Target: 5'- --aGGGACCUggugGGGGGUgUguGCCAGGg -3' miRNA: 3'- cugUCCUGGGg---CCCCCG-AguCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 34077 | 0.67 | 0.522183 |
Target: 5'- cACGGGGCCgggggucCCGGGGGg-CAGCCGc- -3' miRNA: 3'- cUGUCCUGG-------GGCCCCCgaGUCGGUcc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 23087 | 0.67 | 0.52311 |
Target: 5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3' miRNA: 3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 29243 | 0.67 | 0.52311 |
Target: 5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3' miRNA: 3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 26165 | 0.67 | 0.52311 |
Target: 5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3' miRNA: 3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 16932 | 0.67 | 0.52311 |
Target: 5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3' miRNA: 3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 13854 | 0.67 | 0.52311 |
Target: 5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3' miRNA: 3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 20009 | 0.67 | 0.52311 |
Target: 5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3' miRNA: 3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 155573 | 0.67 | 0.52311 |
Target: 5'- cGCGGGGCgCCCGccaGGGGCaCA-CCGGGg -3' miRNA: 3'- cUGUCCUG-GGGC---CCCCGaGUcGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 52706 | 0.67 | 0.52311 |
Target: 5'- gGGCGGGAggUCaGGGGGCggcCGGCCAGa -3' miRNA: 3'- -CUGUCCUggGG-CCCCCGa--GUCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 46041 | 0.67 | 0.532412 |
Target: 5'- cGACGGGGCCCUccaGGGGacgCAGCgAGu -3' miRNA: 3'- -CUGUCCUGGGGc--CCCCga-GUCGgUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 33195 | 0.67 | 0.541772 |
Target: 5'- -cCGGGcacCCCCGGGGGga-GGCCGGa -3' miRNA: 3'- cuGUCCu--GGGGCCCCCgagUCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 167374 | 0.67 | 0.541772 |
Target: 5'- cGGCcgGGGGCUgaGGGGGCUCccgaGGgCGGGg -3' miRNA: 3'- -CUG--UCCUGGggCCCCCGAG----UCgGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 168306 | 0.67 | 0.541772 |
Target: 5'- cGGCcgGGGGCUgaGGGGGCUCccgaGGgCGGGg -3' miRNA: 3'- -CUG--UCCUGGggCCCCCGAG----UCgGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 169238 | 0.67 | 0.541772 |
Target: 5'- cGGCcgGGGGCUgaGGGGGCUCccgaGGgCGGGg -3' miRNA: 3'- -CUG--UCCUGGggCCCCCGAG----UCgGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 170169 | 0.67 | 0.541772 |
Target: 5'- cGGCcgGGGGCUgaGGGGGCUCccgaGGgCGGGg -3' miRNA: 3'- -CUG--UCCUGGggCCCCCGAG----UCgGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 24187 | 0.67 | 0.551187 |
Target: 5'- gGACAGGGCagaGGaGGGCUgGGCCugcgAGGu -3' miRNA: 3'- -CUGUCCUGgggCC-CCCGAgUCGG----UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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