Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 123336 | 0.68 | 0.512031 |
Target: 5'- uGCGGGGCCgucaggggucucgCCGaGGGaGCUCuggcgcuGGCCGGGg -3' miRNA: 3'- cUGUCCUGG-------------GGC-CCC-CGAG-------UCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 68149 | 0.68 | 0.50836 |
Target: 5'- cGCAGGAaaggggcugccuccuCCCCGGGcaGGCgCAGCguCAGGa -3' miRNA: 3'- cUGUCCU---------------GGGGCCC--CCGaGUCG--GUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 127488 | 0.68 | 0.5047 |
Target: 5'- gGACgAGGAgaCggCGGGGGUcgCAGCCGGGg -3' miRNA: 3'- -CUG-UCCUggG--GCCCCCGa-GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 131572 | 0.68 | 0.5047 |
Target: 5'- cGCAGGAgauUCCCGGGgaGGC-CAGCCGa- -3' miRNA: 3'- cUGUCCU---GGGGCCC--CCGaGUCGGUcc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 155861 | 0.68 | 0.5047 |
Target: 5'- cGCAGG--CCCGGcGGGCccuGGCCAGGc -3' miRNA: 3'- cUGUCCugGGGCC-CCCGag-UCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 36204 | 0.68 | 0.5047 |
Target: 5'- aGACAccuGGGcuCCCCGGGaGCgcaagcCGGCCGGGg -3' miRNA: 3'- -CUGU---CCU--GGGGCCCcCGa-----GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 170526 | 0.68 | 0.4956 |
Target: 5'- gGGCGGGGCCUgaGGGGGCgCGGCg--- -3' miRNA: 3'- -CUGUCCUGGGg-CCCCCGaGUCGgucc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 55282 | 0.68 | 0.4956 |
Target: 5'- --uGGGGCUCgCGGuGGGCagCAGCCGGa -3' miRNA: 3'- cugUCCUGGG-GCC-CCCGa-GUCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 63365 | 0.68 | 0.4956 |
Target: 5'- cACAGGGCCCUccuGGGGCUCAuguuuaaaCCAGa -3' miRNA: 3'- cUGUCCUGGGGc--CCCCGAGUc-------GGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 51582 | 0.68 | 0.486575 |
Target: 5'- cGGgAGGGgCCCGGGGG---AGCCAGa -3' miRNA: 3'- -CUgUCCUgGGGCCCCCgagUCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 44365 | 0.68 | 0.486575 |
Target: 5'- gGACgAGGugccagacccccGCCCgGGGGGCguguggGGCCGGGc -3' miRNA: 3'- -CUG-UCC------------UGGGgCCCCCGag----UCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 139133 | 0.68 | 0.486575 |
Target: 5'- gGGCuguGGGCCgaaCGGGGGCUCccgucccCCGGGg -3' miRNA: 3'- -CUGu--CCUGGg--GCCCCCGAGuc-----GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 108994 | 0.68 | 0.477629 |
Target: 5'- --aGGGACCCaCGcucaGGGGCUUguAGuCCAGGg -3' miRNA: 3'- cugUCCUGGG-GC----CCCCGAG--UC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 169475 | 0.68 | 0.477629 |
Target: 5'- --gGGGGCCUCGGGGGCggAGggGGGg -3' miRNA: 3'- cugUCCUGGGGCCCCCGagUCggUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 168543 | 0.68 | 0.477629 |
Target: 5'- --gGGGGCCUCGGGGGCggAGggGGGg -3' miRNA: 3'- cugUCCUGGGGCCCCCGagUCggUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 170406 | 0.68 | 0.477629 |
Target: 5'- --gGGGGCCUCGGGGGCggAGggGGGg -3' miRNA: 3'- cugUCCUGGGGCCCCCGagUCggUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 167611 | 0.68 | 0.477629 |
Target: 5'- --gGGGGCCUCGGGGGCggAGggGGGg -3' miRNA: 3'- cugUCCUGGGGCCCCCGagUCggUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 33104 | 0.68 | 0.468765 |
Target: 5'- gGGCAGccggguGGCCgCCGGcGGGUUC-GCCGGGc -3' miRNA: 3'- -CUGUC------CUGG-GGCC-CCCGAGuCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 41597 | 0.68 | 0.468765 |
Target: 5'- aGGCGGagaGGCCCgGGGGGCUgGuccGCUGGGc -3' miRNA: 3'- -CUGUC---CUGGGgCCCCCGAgU---CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 55378 | 0.68 | 0.468765 |
Target: 5'- cGCGGGACgCCCGGGGcaccgaGGCCAGc -3' miRNA: 3'- cUGUCCUG-GGGCCCCcgag--UCGGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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