Results 101 - 120 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 52080 | 0.68 | 0.459986 |
Target: 5'- cGGgAGGGCUgcggUCGGGGGC-CGGCgAGGc -3' miRNA: 3'- -CUgUCCUGG----GGCCCCCGaGUCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 76915 | 0.68 | 0.459986 |
Target: 5'- --gAGGugaCCGcGGGGCUgCAGCCGGGu -3' miRNA: 3'- cugUCCuggGGC-CCCCGA-GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 62507 | 0.68 | 0.459986 |
Target: 5'- gGACAGGugUuuuuggugcugcCCGGGGGCUUuguuauuaaaGGCCAauuGGa -3' miRNA: 3'- -CUGUCCugG------------GGCCCCCGAG----------UCGGU---CC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 42837 | 0.69 | 0.451295 |
Target: 5'- gGAuCAGGGCCUCGaGGGC-C-GCCAGGc -3' miRNA: 3'- -CU-GUCCUGGGGCcCCCGaGuCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 51643 | 0.69 | 0.442694 |
Target: 5'- aGGCucuGGACuCCCaGGGGGC-CAgggccgguGCCGGGa -3' miRNA: 3'- -CUGu--CCUG-GGG-CCCCCGaGU--------CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 2785 | 0.69 | 0.434187 |
Target: 5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3' miRNA: 3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 921 | 0.69 | 0.434187 |
Target: 5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3' miRNA: 3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 1853 | 0.69 | 0.434187 |
Target: 5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3' miRNA: 3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 3717 | 0.69 | 0.434187 |
Target: 5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3' miRNA: 3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 129385 | 0.69 | 0.425776 |
Target: 5'- cGC-GGAUCCCGGGcG-UCAGCCGGGc -3' miRNA: 3'- cUGuCCUGGGGCCCcCgAGUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 71362 | 0.69 | 0.417462 |
Target: 5'- -----uGCCCCGGGGGCUCGGacuuCCAGc -3' miRNA: 3'- cuguccUGGGGCCCCCGAGUC----GGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 162035 | 0.69 | 0.417462 |
Target: 5'- --uGGGAgCCUGGGGGCggGGgCAGGc -3' miRNA: 3'- cugUCCUgGGGCCCCCGagUCgGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 44313 | 0.69 | 0.416636 |
Target: 5'- aGugGGGGCUggggccguggcagCCGGGGGCuUCuGCaCAGGu -3' miRNA: 3'- -CugUCCUGG-------------GGCCCCCG-AGuCG-GUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 33324 | 0.7 | 0.39233 |
Target: 5'- --uGGGGCUCCGGGGuccggguGCUCcggggcAGCCGGGu -3' miRNA: 3'- cugUCCUGGGGCCCC-------CGAG------UCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 162399 | 0.7 | 0.385221 |
Target: 5'- -cCGGGACCCCGGuGGGCcaggaUGGUgGGGa -3' miRNA: 3'- cuGUCCUGGGGCC-CCCGa----GUCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 34032 | 0.7 | 0.385221 |
Target: 5'- aGGCGGGcguggUCCCGGGGccuauGC-CGGCCGGGg -3' miRNA: 3'- -CUGUCCu----GGGGCCCC-----CGaGUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 135950 | 0.7 | 0.385221 |
Target: 5'- cGCAGGggugccacgucACCCCGGGGuGCUgGGgUGGGg -3' miRNA: 3'- cUGUCC-----------UGGGGCCCC-CGAgUCgGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 32120 | 0.7 | 0.385221 |
Target: 5'- cGCAGGggugccacgucACCCCGGGGuGCUgGGgUGGGg -3' miRNA: 3'- cUGUCC-----------UGGGGCCCC-CGAgUCgGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 1218 | 0.7 | 0.377422 |
Target: 5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3' miRNA: 3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 2150 | 0.7 | 0.377422 |
Target: 5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3' miRNA: 3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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