miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 44955 0.74 0.208044
Target:  5'- cGCGGGgagGCCCCGGGGGaCUCgaccgcgguGGCCGGa -3'
miRNA:   3'- cUGUCC---UGGGGCCCCC-GAG---------UCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 45527 0.65 0.636517
Target:  5'- gGugGGGGCCUgGGccuccuuGGGCUUGGCCGc- -3'
miRNA:   3'- -CugUCCUGGGgCC-------CCCGAGUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 46041 0.67 0.532412
Target:  5'- cGACGGGGCCCUccaGGGGacgCAGCgAGu -3'
miRNA:   3'- -CUGUCCUGGGGc--CCCCga-GUCGgUCc -5'
28883 5' -63.5 NC_006146.1 + 46082 0.71 0.318945
Target:  5'- uGCAGGGCCUCGGGGGCgaagCA-CCGu- -3'
miRNA:   3'- cUGUCCUGGGGCCCCCGa---GUcGGUcc -5'
28883 5' -63.5 NC_006146.1 + 48580 0.74 0.217941
Target:  5'- -cCGGGGCCUCGGGGGUcagggaGGCCAGa -3'
miRNA:   3'- cuGUCCUGGGGCCCCCGag----UCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 49521 0.72 0.273581
Target:  5'- cGGCGGGugaUCCGGGGGCUCcuCUGGGg -3'
miRNA:   3'- -CUGUCCug-GGGCCCCCGAGucGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 51582 0.68 0.486575
Target:  5'- cGGgAGGGgCCCGGGGG---AGCCAGa -3'
miRNA:   3'- -CUgUCCUgGGGCCCCCgagUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 51643 0.69 0.442694
Target:  5'- aGGCucuGGACuCCCaGGGGGC-CAgggccgguGCCGGGa -3'
miRNA:   3'- -CUGu--CCUG-GGG-CCCCCGaGU--------CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 52080 0.68 0.459986
Target:  5'- cGGgAGGGCUgcggUCGGGGGC-CGGCgAGGc -3'
miRNA:   3'- -CUgUCCUGG----GGCCCCCGaGUCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 52706 0.67 0.52311
Target:  5'- gGGCGGGAggUCaGGGGGCggcCGGCCAGa -3'
miRNA:   3'- -CUGUCCUggGG-CCCCCGa--GUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 53637 0.75 0.184991
Target:  5'- cGGCAGGAUCgC-GGGGCUCAGUCAGc -3'
miRNA:   3'- -CUGUCCUGGgGcCCCCGAGUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 54232 0.66 0.60756
Target:  5'- gGGCGGGAgcagagcCUCUGGGcGGCccCGGUCAGGc -3'
miRNA:   3'- -CUGUCCU-------GGGGCCC-CCGa-GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 54601 0.72 0.285991
Target:  5'- gGAgAGGACCgCGGGGGCgccaucCGGCCGc- -3'
miRNA:   3'- -CUgUCCUGGgGCCCCCGa-----GUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 54816 0.66 0.627824
Target:  5'- gGAgAGGACCCggCGGaGGGCg-GGCCAa- -3'
miRNA:   3'- -CUgUCCUGGG--GCC-CCCGagUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 55282 0.68 0.4956
Target:  5'- --uGGGGCUCgCGGuGGGCagCAGCCGGa -3'
miRNA:   3'- cugUCCUGGG-GCC-CCCGa-GUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 55378 0.68 0.468765
Target:  5'- cGCGGGACgCCCGGGGcaccgaGGCCAGc -3'
miRNA:   3'- cUGUCCUG-GGGCCCCcgag--UCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 55640 0.71 0.325869
Target:  5'- --gAGGGCCCCcGaGGGGUgcagCAGCCGGa -3'
miRNA:   3'- cugUCCUGGGG-C-CCCCGa---GUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 56237 0.71 0.332903
Target:  5'- aGCGGGuCCgCGGGGGCggaGGCgGGGc -3'
miRNA:   3'- cUGUCCuGGgGCCCCCGag-UCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 56559 0.66 0.626859
Target:  5'- -cCAGGcCCCCGuccaccuccgucaGGGGC--GGCCGGGc -3'
miRNA:   3'- cuGUCCuGGGGC-------------CCCCGagUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 57342 0.74 0.223038
Target:  5'- gGGCGGGGCCCCGGGuG-UCGGUgAGGg -3'
miRNA:   3'- -CUGUCCUGGGGCCCcCgAGUCGgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.