Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 60139 | 0.68 | 0.513871 |
Target: 5'- --aGGGACCUggugGGGGGUgUguGCCAGGg -3' miRNA: 3'- cugUCCUGGGg---CCCCCG-AguCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 60463 | 0.72 | 0.305431 |
Target: 5'- cGGCAGG-CCgCGGGGaGCggugagaGGCCGGGg -3' miRNA: 3'- -CUGUCCuGGgGCCCC-CGag-----UCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 62507 | 0.68 | 0.459986 |
Target: 5'- gGACAGGugUuuuuggugcugcCCGGGGGCUUuguuauuaaaGGCCAauuGGa -3' miRNA: 3'- -CUGUCCugG------------GGCCCCCGAG----------UCGGU---CC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 62944 | 0.67 | 0.56065 |
Target: 5'- -cCAGGGCCCUGGaGGuCUCGGCUg-- -3' miRNA: 3'- cuGUCCUGGGGCCcCC-GAGUCGGucc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 63365 | 0.68 | 0.4956 |
Target: 5'- cACAGGGCCCUccuGGGGCUCAuguuuaaaCCAGa -3' miRNA: 3'- cUGUCCUGGGGc--CCCCGAGUc-------GGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 68149 | 0.68 | 0.50836 |
Target: 5'- cGCAGGAaaggggcugccuccuCCCCGGGcaGGCgCAGCguCAGGa -3' miRNA: 3'- cUGUCCU---------------GGGGCCC--CCGaGUCG--GUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 69702 | 0.66 | 0.618169 |
Target: 5'- -cCAGGuggaucuucaGCUCCGaGGGGCgCAGCguGGa -3' miRNA: 3'- cuGUCC----------UGGGGC-CCCCGaGUCGguCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 71362 | 0.69 | 0.417462 |
Target: 5'- -----uGCCCCGGGGGCUCGGacuuCCAGc -3' miRNA: 3'- cuguccUGGGGCCCCCGAGUC----GGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 76915 | 0.68 | 0.459986 |
Target: 5'- --gAGGugaCCGcGGGGCUgCAGCCGGGu -3' miRNA: 3'- cugUCCuggGGC-CCCCGA-GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 87166 | 0.66 | 0.579705 |
Target: 5'- -uCAcGGCCCacaGGGGGUuguuuUUGGCCAGGg -3' miRNA: 3'- cuGUcCUGGGg--CCCCCG-----AGUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 94943 | 0.67 | 0.56065 |
Target: 5'- gGACGuGGCCgCUgcgguagagGGGGGUgugCAGCCAGGc -3' miRNA: 3'- -CUGUcCUGG-GG---------CCCCCGa--GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 96813 | 0.66 | 0.598894 |
Target: 5'- uGCAGGcuuCCCUGGuGGGgaCGGgCGGGc -3' miRNA: 3'- cUGUCCu--GGGGCC-CCCgaGUCgGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 99049 | 0.66 | 0.622031 |
Target: 5'- -cCAGGGCCCggcgggugucggCGGugccguagugguggaGGGCccgCAGCCAGGu -3' miRNA: 3'- cuGUCCUGGG------------GCC---------------CCCGa--GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 101962 | 0.66 | 0.627824 |
Target: 5'- uGGCuaGGGGCUCCGGGcucuggcuagaGGCUCuggcucccuuGCUAGGg -3' miRNA: 3'- -CUG--UCCUGGGGCCC-----------CCGAGu---------CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 103552 | 0.7 | 0.36973 |
Target: 5'- gGACccGGACCCCGaggauGGGCUCgcccgggccugGGCCGGGc -3' miRNA: 3'- -CUGu-CCUGGGGCc----CCCGAG-----------UCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 108994 | 0.68 | 0.477629 |
Target: 5'- --aGGGACCCaCGcucaGGGGCUUguAGuCCAGGg -3' miRNA: 3'- cugUCCUGGG-GC----CCCCGAG--UC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 113695 | 0.66 | 0.598894 |
Target: 5'- cGGCcuccGGCCCgGGGacGGCggcggCAGCCGGGa -3' miRNA: 3'- -CUGuc--CUGGGgCCC--CCGa----GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 113972 | 0.74 | 0.217941 |
Target: 5'- aGGgGGGugCCCGGGGGCUCcGCguuguugaAGGa -3' miRNA: 3'- -CUgUCCugGGGCCCCCGAGuCGg-------UCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 114221 | 0.72 | 0.285991 |
Target: 5'- aGCAGGgccaGCCCCaGGGGGCcCGGCaccuCAGGg -3' miRNA: 3'- cUGUCC----UGGGG-CCCCCGaGUCG----GUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 116252 | 0.68 | 0.513871 |
Target: 5'- cGACGGGGCCCCuccaaugcccGGGGaGCcacCGGaCCAGa -3' miRNA: 3'- -CUGUCCUGGGG----------CCCC-CGa--GUC-GGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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