miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 141922 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 141746 0.67 0.570158
Target:  5'- gGAC-GGugCaCCGGGaaGGCUCAGCgucucCAGGc -3'
miRNA:   3'- -CUGuCCugG-GGCCC--CCGAGUCG-----GUCC- -5'
28883 5' -63.5 NC_006146.1 + 139133 0.68 0.486575
Target:  5'- gGGCuguGGGCCgaaCGGGGGCUCccgucccCCGGGg -3'
miRNA:   3'- -CUGu--CCUGGg--GCCCCCGAGuc-----GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 137972 0.74 0.212943
Target:  5'- cGGCcGGGCcuCCCGGGGGCcCGGCgGGGu -3'
miRNA:   3'- -CUGuCCUG--GGGCCCCCGaGUCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 137908 0.71 0.353929
Target:  5'- gGACAGGGCCggggguuCCGGGGGC--AGCCGc- -3'
miRNA:   3'- -CUGUCCUGG-------GGCCCCCGagUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 137208 0.68 0.513871
Target:  5'- -cCGGGcacACCCCGGGGaggaAGCCGGGu -3'
miRNA:   3'- cuGUCC---UGGGGCCCCcgagUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 137008 0.7 0.375103
Target:  5'- gGACGGGgguaggccgggcacACCCCGGGGaggaGGCCGGGu -3'
miRNA:   3'- -CUGUCC--------------UGGGGCCCCcgagUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 136762 0.71 0.318945
Target:  5'- -cCGGGGCUCCGGGaGGCcCGGCCGc- -3'
miRNA:   3'- cuGUCCUGGGGCCC-CCGaGUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 135950 0.7 0.385221
Target:  5'- cGCAGGggugccacgucACCCCGGGGuGCUgGGgUGGGg -3'
miRNA:   3'- cUGUCC-----------UGGGGCCCC-CGAgUCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 135610 0.68 0.513871
Target:  5'- aGACAGGcaACCCC-GGGGCUgA-UCAGGu -3'
miRNA:   3'- -CUGUCC--UGGGGcCCCCGAgUcGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 131572 0.68 0.5047
Target:  5'- cGCAGGAgauUCCCGGGgaGGC-CAGCCGa- -3'
miRNA:   3'- cUGUCCU---GGGGCCC--CCGaGUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 129385 0.69 0.425776
Target:  5'- cGC-GGAUCCCGGGcG-UCAGCCGGGc -3'
miRNA:   3'- cUGuCCUGGGGCCCcCgAGUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 129141 0.66 0.618169
Target:  5'- cGCAGGGCCuCCGGcGGGa--AGCCcacccgucucAGGg -3'
miRNA:   3'- cUGUCCUGG-GGCC-CCCgagUCGG----------UCC- -5'
28883 5' -63.5 NC_006146.1 + 128204 0.7 0.36973
Target:  5'- aGCGGG-CgCUgGGGGGCUCuGCCAGc -3'
miRNA:   3'- cUGUCCuG-GGgCCCCCGAGuCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 128175 0.66 0.627824
Target:  5'- uGCAGcGACgCCGGGaGGC--GGcCCAGGg -3'
miRNA:   3'- cUGUC-CUGgGGCCC-CCGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 127488 0.68 0.5047
Target:  5'- gGACgAGGAgaCggCGGGGGUcgCAGCCGGGg -3'
miRNA:   3'- -CUG-UCCUggG--GCCCCCGa-GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 124531 0.66 0.608524
Target:  5'- gGACGGGGgCCUGGGGGagcugCuGUCGGa -3'
miRNA:   3'- -CUGUCCUgGGGCCCCCga---GuCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 123336 0.68 0.512031
Target:  5'- uGCGGGGCCgucaggggucucgCCGaGGGaGCUCuggcgcuGGCCGGGg -3'
miRNA:   3'- cUGUCCUGG-------------GGC-CCC-CGAG-------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 117581 0.66 0.617204
Target:  5'- cGCcGGGCCuCCucGGGCUCggacuccGGCCAGGg -3'
miRNA:   3'- cUGuCCUGG-GGccCCCGAG-------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 117252 0.66 0.589286
Target:  5'- -cCGGGGCCa-GGGGGgUCGG-CAGGu -3'
miRNA:   3'- cuGUCCUGGggCCCCCgAGUCgGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.