miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 116252 0.68 0.513871
Target:  5'- cGACGGGGCCCCuccaaugcccGGGGaGCcacCGGaCCAGa -3'
miRNA:   3'- -CUGUCCUGGGG----------CCCC-CGa--GUC-GGUCc -5'
28883 5' -63.5 NC_006146.1 + 114221 0.72 0.285991
Target:  5'- aGCAGGgccaGCCCCaGGGGGCcCGGCaccuCAGGg -3'
miRNA:   3'- cUGUCC----UGGGG-CCCCCGaGUCG----GUCC- -5'
28883 5' -63.5 NC_006146.1 + 113972 0.74 0.217941
Target:  5'- aGGgGGGugCCCGGGGGCUCcGCguuguugaAGGa -3'
miRNA:   3'- -CUgUCCugGGGCCCCCGAGuCGg-------UCC- -5'
28883 5' -63.5 NC_006146.1 + 113695 0.66 0.598894
Target:  5'- cGGCcuccGGCCCgGGGacGGCggcggCAGCCGGGa -3'
miRNA:   3'- -CUGuc--CUGGGgCCC--CCGa----GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 108994 0.68 0.477629
Target:  5'- --aGGGACCCaCGcucaGGGGCUUguAGuCCAGGg -3'
miRNA:   3'- cugUCCUGGG-GC----CCCCGAG--UC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 103552 0.7 0.36973
Target:  5'- gGACccGGACCCCGaggauGGGCUCgcccgggccugGGCCGGGc -3'
miRNA:   3'- -CUGu-CCUGGGGCc----CCCGAG-----------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 101962 0.66 0.627824
Target:  5'- uGGCuaGGGGCUCCGGGcucuggcuagaGGCUCuggcucccuuGCUAGGg -3'
miRNA:   3'- -CUG--UCCUGGGGCCC-----------CCGAGu---------CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 99049 0.66 0.622031
Target:  5'- -cCAGGGCCCggcgggugucggCGGugccguagugguggaGGGCccgCAGCCAGGu -3'
miRNA:   3'- cuGUCCUGGG------------GCC---------------CCCGa--GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 96813 0.66 0.598894
Target:  5'- uGCAGGcuuCCCUGGuGGGgaCGGgCGGGc -3'
miRNA:   3'- cUGUCCu--GGGGCC-CCCgaGUCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 94943 0.67 0.56065
Target:  5'- gGACGuGGCCgCUgcgguagagGGGGGUgugCAGCCAGGc -3'
miRNA:   3'- -CUGUcCUGG-GG---------CCCCCGa--GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 87166 0.66 0.579705
Target:  5'- -uCAcGGCCCacaGGGGGUuguuuUUGGCCAGGg -3'
miRNA:   3'- cuGUcCUGGGg--CCCCCG-----AGUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 76915 0.68 0.459986
Target:  5'- --gAGGugaCCGcGGGGCUgCAGCCGGGu -3'
miRNA:   3'- cugUCCuggGGC-CCCCGA-GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 71362 0.69 0.417462
Target:  5'- -----uGCCCCGGGGGCUCGGacuuCCAGc -3'
miRNA:   3'- cuguccUGGGGCCCCCGAGUC----GGUCc -5'
28883 5' -63.5 NC_006146.1 + 69702 0.66 0.618169
Target:  5'- -cCAGGuggaucuucaGCUCCGaGGGGCgCAGCguGGa -3'
miRNA:   3'- cuGUCC----------UGGGGC-CCCCGaGUCGguCC- -5'
28883 5' -63.5 NC_006146.1 + 68149 0.68 0.50836
Target:  5'- cGCAGGAaaggggcugccuccuCCCCGGGcaGGCgCAGCguCAGGa -3'
miRNA:   3'- cUGUCCU---------------GGGGCCC--CCGaGUCG--GUCC- -5'
28883 5' -63.5 NC_006146.1 + 63365 0.68 0.4956
Target:  5'- cACAGGGCCCUccuGGGGCUCAuguuuaaaCCAGa -3'
miRNA:   3'- cUGUCCUGGGGc--CCCCGAGUc-------GGUCc -5'
28883 5' -63.5 NC_006146.1 + 62944 0.67 0.56065
Target:  5'- -cCAGGGCCCUGGaGGuCUCGGCUg-- -3'
miRNA:   3'- cuGUCCUGGGGCCcCC-GAGUCGGucc -5'
28883 5' -63.5 NC_006146.1 + 62507 0.68 0.459986
Target:  5'- gGACAGGugUuuuuggugcugcCCGGGGGCUUuguuauuaaaGGCCAauuGGa -3'
miRNA:   3'- -CUGUCCugG------------GGCCCCCGAG----------UCGGU---CC- -5'
28883 5' -63.5 NC_006146.1 + 60463 0.72 0.305431
Target:  5'- cGGCAGG-CCgCGGGGaGCggugagaGGCCGGGg -3'
miRNA:   3'- -CUGUCCuGGgGCCCC-CGag-----UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 60139 0.68 0.513871
Target:  5'- --aGGGACCUggugGGGGGUgUguGCCAGGg -3'
miRNA:   3'- cugUCCUGGGg---CCCCCG-AguCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.