miRNA display CGI


Results 101 - 120 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 44766 0.67 0.551187
Target:  5'- -uCGGGG-CCCGGcGGGCggggaacccaGGCCGGGg -3'
miRNA:   3'- cuGUCCUgGGGCC-CCCGag--------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 44561 0.74 0.233003
Target:  5'- -cCGGGGCUCCGGGuGGCUgGcggaaauGCCAGGa -3'
miRNA:   3'- cuGUCCUGGGGCCC-CCGAgU-------CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 44365 0.68 0.486575
Target:  5'- gGACgAGGugccagacccccGCCCgGGGGGCguguggGGCCGGGc -3'
miRNA:   3'- -CUG-UCC------------UGGGgCCCCCGag----UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 44354 0.71 0.312133
Target:  5'- uGACcgcGGGCCCCGGGGGCagAGaCaaaaAGGa -3'
miRNA:   3'- -CUGu--CCUGGGGCCCCCGagUC-Gg---UCC- -5'
28883 5' -63.5 NC_006146.1 + 44313 0.69 0.416636
Target:  5'- aGugGGGGCUggggccguggcagCCGGGGGCuUCuGCaCAGGu -3'
miRNA:   3'- -CugUCCUGG-------------GGCCCCCG-AGuCG-GUCC- -5'
28883 5' -63.5 NC_006146.1 + 42837 0.69 0.451295
Target:  5'- gGAuCAGGGCCUCGaGGGC-C-GCCAGGc -3'
miRNA:   3'- -CU-GUCCUGGGGCcCCCGaGuCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 41597 0.68 0.468765
Target:  5'- aGGCGGagaGGCCCgGGGGGCUgGuccGCUGGGc -3'
miRNA:   3'- -CUGUC---CUGGGgCCCCCGAgU---CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 41052 0.78 0.119724
Target:  5'- cGCGGcGGCCCUGGGGGcCUCgggguggagggaGGCCAGGg -3'
miRNA:   3'- cUGUC-CUGGGGCCCCC-GAG------------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 39849 0.66 0.589286
Target:  5'- cAguGGGCCggCGGGGGCUguGugcCCGGGg -3'
miRNA:   3'- cUguCCUGGg-GCCCCCGAguC---GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 36204 0.68 0.5047
Target:  5'- aGACAccuGGGcuCCCCGGGaGCgcaagcCGGCCGGGg -3'
miRNA:   3'- -CUGU---CCU--GGGGCCCcCGa-----GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 34077 0.67 0.522183
Target:  5'- cACGGGGCCgggggucCCGGGGGg-CAGCCGc- -3'
miRNA:   3'- cUGUCCUGG-------GGCCCCCgaGUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 34032 0.7 0.385221
Target:  5'- aGGCGGGcguggUCCCGGGGccuauGC-CGGCCGGGg -3'
miRNA:   3'- -CUGUCCu----GGGGCCCC-----CGaGUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 33324 0.7 0.39233
Target:  5'- --uGGGGCUCCGGGGuccggguGCUCcggggcAGCCGGGu -3'
miRNA:   3'- cugUCCUGGGGCCCC-------CGAG------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 33200 0.66 0.631688
Target:  5'- ---uGGGCCuCCGGGuGCUCcuggugcuccggggcAGCCGGGu -3'
miRNA:   3'- cuguCCUGG-GGCCCcCGAG---------------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 33195 0.67 0.541772
Target:  5'- -cCGGGcacCCCCGGGGGga-GGCCGGa -3'
miRNA:   3'- cuGUCCu--GGGGCCCCCgagUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 33104 0.68 0.468765
Target:  5'- gGGCAGccggguGGCCgCCGGcGGGUUC-GCCGGGc -3'
miRNA:   3'- -CUGUC------CUGG-GGCC-CCCGAGuCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 32930 0.67 0.570158
Target:  5'- cGCcGGcCCCCGGGaGGCcCGGCCGc- -3'
miRNA:   3'- cUGuCCuGGGGCCC-CCGaGUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 32120 0.7 0.385221
Target:  5'- cGCAGGggugccacgucACCCCGGGGuGCUgGGgUGGGg -3'
miRNA:   3'- cUGUCC-----------UGGGGCCCC-CGAgUCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 29588 1.08 0.000846
Target:  5'- gGACAGGACCCCGGGGGCUCAGCCAGGc -3'
miRNA:   3'- -CUGUCCUGGGGCCCCCGAGUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 29243 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.