miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 167611 0.68 0.477629
Target:  5'- --gGGGGCCUCGGGGGCggAGggGGGg -3'
miRNA:   3'- cugUCCUGGGGCCCCCGagUCggUCC- -5'
28883 5' -63.5 NC_006146.1 + 49521 0.72 0.273581
Target:  5'- cGGCGGGugaUCCGGGGGCUCcuCUGGGg -3'
miRNA:   3'- -CUGUCCug-GGGCCCCCGAGucGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 20832 0.77 0.142082
Target:  5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3'
miRNA:   3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 55378 0.68 0.468765
Target:  5'- cGCGGGACgCCCGGGGcaccgaGGCCAGc -3'
miRNA:   3'- cUGUCCUG-GGGCCCCcgag--UCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 17754 0.77 0.142082
Target:  5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3'
miRNA:   3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 169238 0.67 0.541772
Target:  5'- cGGCcgGGGGCUgaGGGGGCUCccgaGGgCGGGg -3'
miRNA:   3'- -CUG--UCCUGGggCCCCCGAG----UCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 26987 0.77 0.142082
Target:  5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3'
miRNA:   3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 46041 0.67 0.532412
Target:  5'- cGACGGGGCCCUccaGGGGacgCAGCgAGu -3'
miRNA:   3'- -CUGUCCUGGGGc--CCCCga-GUCGgUCc -5'
28883 5' -63.5 NC_006146.1 + 29243 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 13854 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 68149 0.68 0.50836
Target:  5'- cGCAGGAaaggggcugccuccuCCCCGGGcaGGCgCAGCguCAGGa -3'
miRNA:   3'- cUGUCCU---------------GGGGCCC--CCGaGUCG--GUCC- -5'
28883 5' -63.5 NC_006146.1 + 139133 0.68 0.486575
Target:  5'- gGGCuguGGGCCgaaCGGGGGCUCccgucccCCGGGg -3'
miRNA:   3'- -CUGu--CCUGGg--GCCCCCGAGuc-----GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 169475 0.68 0.477629
Target:  5'- --gGGGGCCUCGGGGGCggAGggGGGg -3'
miRNA:   3'- cugUCCUGGGGCCCCCGagUCggUCC- -5'
28883 5' -63.5 NC_006146.1 + 52080 0.68 0.459986
Target:  5'- cGGgAGGGCUgcggUCGGGGGC-CGGCgAGGc -3'
miRNA:   3'- -CUgUCCUGG----GGCCCCCGaGUCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 33324 0.7 0.39233
Target:  5'- --uGGGGCUCCGGGGuccggguGCUCcggggcAGCCGGGu -3'
miRNA:   3'- cugUCCUGGGGCCCC-------CGAG------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 56237 0.71 0.332903
Target:  5'- aGCGGGuCCgCGGGGGCggaGGCgGGGc -3'
miRNA:   3'- cUGUCCuGGgGCCCCCGag-UCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 114221 0.72 0.285991
Target:  5'- aGCAGGgccaGCCCCaGGGGGCcCGGCaccuCAGGg -3'
miRNA:   3'- cUGUCC----UGGGG-CCCCCGaGUCG----GUCC- -5'
28883 5' -63.5 NC_006146.1 + 48580 0.74 0.217941
Target:  5'- -cCGGGGCCUCGGGGGUcagggaGGCCAGa -3'
miRNA:   3'- cuGUCCUGGGGCCCCCGag----UCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 170203 0.75 0.184991
Target:  5'- -cCGGGGCCUggCGGGGGC-CAGCgCGGGg -3'
miRNA:   3'- cuGUCCUGGG--GCCCCCGaGUCG-GUCC- -5'
28883 5' -63.5 NC_006146.1 + 53637 0.75 0.184991
Target:  5'- cGGCAGGAUCgC-GGGGCUCAGUCAGc -3'
miRNA:   3'- -CUGUCCUGGgGcCCCCGAGUCGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.