miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 44365 0.68 0.486575
Target:  5'- gGACgAGGugccagacccccGCCCgGGGGGCguguggGGCCGGGc -3'
miRNA:   3'- -CUG-UCC------------UGGGgCCCCCGag----UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 170526 0.68 0.4956
Target:  5'- gGGCGGGGCCUgaGGGGGCgCGGCg--- -3'
miRNA:   3'- -CUGUCCUGGGg-CCCCCGaGUCGgucc -5'
28883 5' -63.5 NC_006146.1 + 114221 0.72 0.285991
Target:  5'- aGCAGGgccaGCCCCaGGGGGCcCGGCaccuCAGGg -3'
miRNA:   3'- cUGUCC----UGGGG-CCCCCGaGUCG----GUCC- -5'
28883 5' -63.5 NC_006146.1 + 56237 0.71 0.332903
Target:  5'- aGCGGGuCCgCGGGGGCggaGGCgGGGc -3'
miRNA:   3'- cUGUCCuGGgGCCCCCGag-UCGgUCC- -5'
28883 5' -63.5 NC_006146.1 + 33324 0.7 0.39233
Target:  5'- --uGGGGCUCCGGGGuccggguGCUCcggggcAGCCGGGu -3'
miRNA:   3'- cugUCCUGGGGCCCC-------CGAG------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 44313 0.69 0.416636
Target:  5'- aGugGGGGCUggggccguggcagCCGGGGGCuUCuGCaCAGGu -3'
miRNA:   3'- -CugUCCUGG-------------GGCCCCCG-AGuCG-GUCC- -5'
28883 5' -63.5 NC_006146.1 + 33104 0.68 0.468765
Target:  5'- gGGCAGccggguGGCCgCCGGcGGGUUC-GCCGGGc -3'
miRNA:   3'- -CUGUC------CUGG-GGCC-CCCGAGuCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 41597 0.68 0.468765
Target:  5'- aGGCGGagaGGCCCgGGGGGCUgGuccGCUGGGc -3'
miRNA:   3'- -CUGUC---CUGGGgCCCCCGAgU---CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 167611 0.68 0.477629
Target:  5'- --gGGGGCCUCGGGGGCggAGggGGGg -3'
miRNA:   3'- cugUCCUGGGGCCCCCGagUCggUCC- -5'
28883 5' -63.5 NC_006146.1 + 168543 0.68 0.477629
Target:  5'- --gGGGGCCUCGGGGGCggAGggGGGg -3'
miRNA:   3'- cugUCCUGGGGCCCCCGagUCggUCC- -5'
28883 5' -63.5 NC_006146.1 + 96813 0.66 0.598894
Target:  5'- uGCAGGcuuCCCUGGuGGGgaCGGgCGGGc -3'
miRNA:   3'- cUGUCCu--GGGGCC-CCCgaGUCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 169740 0.66 0.579705
Target:  5'- cGCGGGggaGCCCCGGGG---CGGcCCGGGg -3'
miRNA:   3'- cUGUCC---UGGGGCCCCcgaGUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 34077 0.67 0.522183
Target:  5'- cACGGGGCCgggggucCCGGGGGg-CAGCCGc- -3'
miRNA:   3'- cUGUCCUGG-------GGCCCCCgaGUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 20009 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 46041 0.67 0.532412
Target:  5'- cGACGGGGCCCUccaGGGGacgCAGCgAGu -3'
miRNA:   3'- -CUGUCCUGGGGc--CCCCga-GUCGgUCc -5'
28883 5' -63.5 NC_006146.1 + 169238 0.67 0.541772
Target:  5'- cGGCcgGGGGCUgaGGGGGCUCccgaGGgCGGGg -3'
miRNA:   3'- -CUG--UCCUGGggCCCCCGAG----UCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 94943 0.67 0.56065
Target:  5'- gGACGuGGCCgCUgcgguagagGGGGGUgugCAGCCAGGc -3'
miRNA:   3'- -CUGUcCUGG-GG---------CCCCCGa--GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 169063 0.67 0.56065
Target:  5'- -cCGGGGuCCCgGGGGGCggcgcgCGGCCu-- -3'
miRNA:   3'- cuGUCCU-GGGgCCCCCGa-----GUCGGucc -5'
28883 5' -63.5 NC_006146.1 + 22653 0.67 0.570158
Target:  5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3'
miRNA:   3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 141746 0.67 0.570158
Target:  5'- gGAC-GGugCaCCGGGaaGGCUCAGCgucucCAGGc -3'
miRNA:   3'- -CUGuCCugG-GGCCC--CCGAGUCG-----GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.