miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 13419 0.67 0.570158
Target:  5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3'
miRNA:   3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 16497 0.67 0.570158
Target:  5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3'
miRNA:   3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 22653 0.67 0.570158
Target:  5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3'
miRNA:   3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 25731 0.67 0.570158
Target:  5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3'
miRNA:   3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 168808 0.66 0.579705
Target:  5'- cGCGGGggaGCCCCGGGG---CGGcCCGGGg -3'
miRNA:   3'- cUGUCC---UGGGGCCCCcgaGUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 20009 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 68149 0.68 0.50836
Target:  5'- cGCAGGAaaggggcugccuccuCCCCGGGcaGGCgCAGCguCAGGa -3'
miRNA:   3'- cUGUCCU---------------GGGGCCC--CCGaGUCG--GUCC- -5'
28883 5' -63.5 NC_006146.1 + 29243 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 52706 0.67 0.52311
Target:  5'- gGGCGGGAggUCaGGGGGCggcCGGCCAGa -3'
miRNA:   3'- -CUGUCCUggGG-CCCCCGa--GUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 55282 0.68 0.4956
Target:  5'- --uGGGGCUCgCGGuGGGCagCAGCCGGa -3'
miRNA:   3'- cugUCCUGGG-GCC-CCCGa-GUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 46041 0.67 0.532412
Target:  5'- cGACGGGGCCCUccaGGGGacgCAGCgAGu -3'
miRNA:   3'- -CUGUCCUGGGGc--CCCCga-GUCGgUCc -5'
28883 5' -63.5 NC_006146.1 + 33200 0.66 0.631688
Target:  5'- ---uGGGCCuCCGGGuGCUCcuggugcuccggggcAGCCGGGu -3'
miRNA:   3'- cuguCCUGG-GGCCCcCGAG---------------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 16932 0.67 0.52311
Target:  5'- --aGGGACCCCGGcGGCccggUguGCCAGc -3'
miRNA:   3'- cugUCCUGGGGCCcCCG----AguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 123336 0.68 0.512031
Target:  5'- uGCGGGGCCgucaggggucucgCCGaGGGaGCUCuggcgcuGGCCGGGg -3'
miRNA:   3'- cUGUCCUGG-------------GGC-CCC-CGAG-------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 135610 0.68 0.513871
Target:  5'- aGACAGGcaACCCC-GGGGCUgA-UCAGGu -3'
miRNA:   3'- -CUGUCC--UGGGGcCCCCGAgUcGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 44561 0.74 0.233003
Target:  5'- -cCGGGGCUCCGGGuGGCUgGcggaaauGCCAGGa -3'
miRNA:   3'- cuGUCCUGGGGCCC-CCGAgU-------CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 136762 0.71 0.318945
Target:  5'- -cCGGGGCUCCGGGaGGCcCGGCCGc- -3'
miRNA:   3'- cuGUCCUGGGGCCC-CCGaGUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 44354 0.71 0.312133
Target:  5'- uGACcgcGGGCCCCGGGGGCagAGaCaaaaAGGa -3'
miRNA:   3'- -CUGu--CCUGGGGCCCCCGagUC-Gg---UCC- -5'
28883 5' -63.5 NC_006146.1 + 60463 0.72 0.305431
Target:  5'- cGGCAGG-CCgCGGGGaGCggugagaGGCCGGGg -3'
miRNA:   3'- -CUGUCCuGGgGCCCC-CGag-----UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 154234 0.67 0.56065
Target:  5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3'
miRNA:   3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.