miRNA display CGI


Results 101 - 120 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 44561 0.74 0.233003
Target:  5'- -cCGGGGCUCCGGGuGGCUgGcggaaauGCCAGGa -3'
miRNA:   3'- cuGUCCUGGGGCCC-CCGAgU-------CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 20190 0.73 0.250062
Target:  5'- --gAGGGcCCCCGGGGGCgcaggaGGCUGGGc -3'
miRNA:   3'- cugUCCU-GGGGCCCCCGag----UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 26141 0.71 0.330781
Target:  5'- -cCGGGGCCCggucggaaagagcaCGGGGGCUuaagCGGCCuGGa -3'
miRNA:   3'- cuGUCCUGGG--------------GCCCCCGA----GUCGGuCC- -5'
28883 5' -63.5 NC_006146.1 + 44354 0.71 0.312133
Target:  5'- uGACcgcGGGCCCCGGGGGCagAGaCaaaaAGGa -3'
miRNA:   3'- -CUGu--CCUGGGGCCCCCGagUC-Gg---UCC- -5'
28883 5' -63.5 NC_006146.1 + 136762 0.71 0.318945
Target:  5'- -cCGGGGCUCCGGGaGGCcCGGCCGc- -3'
miRNA:   3'- cuGUCCUGGGGCCC-CCGaGUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 137008 0.7 0.375103
Target:  5'- gGACGGGgguaggccgggcacACCCCGGGGaggaGGCCGGGu -3'
miRNA:   3'- -CUGUCC--------------UGGGGCCCCcgagUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 1218 0.7 0.377422
Target:  5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3'
miRNA:   3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 123336 0.68 0.512031
Target:  5'- uGCGGGGCCgucaggggucucgCCGaGGGaGCUCuggcgcuGGCCGGGg -3'
miRNA:   3'- cUGUCCUGG-------------GGC-CCC-CGAG-------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 135610 0.68 0.513871
Target:  5'- aGACAGGcaACCCC-GGGGCUgA-UCAGGu -3'
miRNA:   3'- -CUGUCC--UGGGGcCCCCGAgUcGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 116252 0.68 0.513871
Target:  5'- cGACGGGGCCCCuccaaugcccGGGGaGCcacCGGaCCAGa -3'
miRNA:   3'- -CUGUCCUGGGG----------CCCC-CGa--GUC-GGUCc -5'
28883 5' -63.5 NC_006146.1 + 137208 0.68 0.513871
Target:  5'- -cCGGGcacACCCCGGGGaggaAGCCGGGu -3'
miRNA:   3'- cuGUCC---UGGGGCCCCcgagUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 33195 0.67 0.541772
Target:  5'- -cCGGGcacCCCCGGGGGga-GGCCGGa -3'
miRNA:   3'- cuGUCCu--GGGGCCCCCgagUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 24187 0.67 0.551187
Target:  5'- gGACAGGGCagaGGaGGGCUgGGCCugcgAGGu -3'
miRNA:   3'- -CUGUCCUGgggCC-CCCGAgUCGG----UCC- -5'
28883 5' -63.5 NC_006146.1 + 142191 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 145269 0.67 0.551187
Target:  5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3'
miRNA:   3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 60463 0.72 0.305431
Target:  5'- cGGCAGG-CCgCGGGGaGCggugagaGGCCGGGg -3'
miRNA:   3'- -CUGUCCuGGgGCCCC-CGag-----UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 135950 0.7 0.385221
Target:  5'- cGCAGGggugccacgucACCCCGGGGuGCUgGGgUGGGg -3'
miRNA:   3'- cUGUCC-----------UGGGGCCCC-CGAgUCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 32120 0.7 0.385221
Target:  5'- cGCAGGggugccacgucACCCCGGGGuGCUgGGgUGGGg -3'
miRNA:   3'- cUGUCC-----------UGGGGCCCC-CGAgUCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 3082 0.7 0.377422
Target:  5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3'
miRNA:   3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 2150 0.7 0.377422
Target:  5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3'
miRNA:   3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.