Results 121 - 140 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 3082 | 0.7 | 0.377422 |
Target: 5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3' miRNA: 3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 2150 | 0.7 | 0.377422 |
Target: 5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3' miRNA: 3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 1218 | 0.7 | 0.377422 |
Target: 5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3' miRNA: 3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 137008 | 0.7 | 0.375103 |
Target: 5'- gGACGGGgguaggccgggcacACCCCGGGGaggaGGCCGGGu -3' miRNA: 3'- -CUGUCC--------------UGGGGCCCCcgagUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 128204 | 0.7 | 0.36973 |
Target: 5'- aGCGGG-CgCUgGGGGGCUCuGCCAGc -3' miRNA: 3'- cUGUCCuG-GGgCCCCCGAGuCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 20190 | 0.73 | 0.250062 |
Target: 5'- --gAGGGcCCCCGGGGGCgcaggaGGCUGGGc -3' miRNA: 3'- cugUCCU-GGGGCCCCCGag----UCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 2785 | 0.69 | 0.434187 |
Target: 5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3' miRNA: 3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 3717 | 0.69 | 0.434187 |
Target: 5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3' miRNA: 3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 51643 | 0.69 | 0.442694 |
Target: 5'- aGGCucuGGACuCCCaGGGGGC-CAgggccgguGCCGGGa -3' miRNA: 3'- -CUGu--CCUG-GGG-CCCCCGaGU--------CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 116252 | 0.68 | 0.513871 |
Target: 5'- cGACGGGGCCCCuccaaugcccGGGGaGCcacCGGaCCAGa -3' miRNA: 3'- -CUGUCCUGGGG----------CCCC-CGa--GUC-GGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 135610 | 0.68 | 0.513871 |
Target: 5'- aGACAGGcaACCCC-GGGGCUgA-UCAGGu -3' miRNA: 3'- -CUGUCC--UGGGGcCCCCGAgUcGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 123336 | 0.68 | 0.512031 |
Target: 5'- uGCGGGGCCgucaggggucucgCCGaGGGaGCUCuggcgcuGGCCGGGg -3' miRNA: 3'- cUGUCCUGG-------------GGC-CCC-CGAG-------UCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 60463 | 0.72 | 0.305431 |
Target: 5'- cGGCAGG-CCgCGGGGaGCggugagaGGCCGGGg -3' miRNA: 3'- -CUGUCCuGGgGCCCC-CGag-----UCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 44354 | 0.71 | 0.312133 |
Target: 5'- uGACcgcGGGCCCCGGGGGCagAGaCaaaaAGGa -3' miRNA: 3'- -CUGu--CCUGGGGCCCCCGagUC-Gg---UCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 136762 | 0.71 | 0.318945 |
Target: 5'- -cCGGGGCUCCGGGaGGCcCGGCCGc- -3' miRNA: 3'- cuGUCCUGGGGCCC-CCGaGUCGGUcc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 26141 | 0.71 | 0.330781 |
Target: 5'- -cCGGGGCCCggucggaaagagcaCGGGGGCUuaagCGGCCuGGa -3' miRNA: 3'- cuGUCCUGGG--------------GCCCCCGA----GUCGGuCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 14108 | 0.71 | 0.332903 |
Target: 5'- gGGCGGGAUgUCGGGGcuGCUggcggcggccuaCAGCCAGGu -3' miRNA: 3'- -CUGUCCUGgGGCCCC--CGA------------GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 76915 | 0.68 | 0.459986 |
Target: 5'- --gAGGugaCCGcGGGGCUgCAGCCGGGu -3' miRNA: 3'- cugUCCuggGGC-CCCCGA-GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 62507 | 0.68 | 0.459986 |
Target: 5'- gGACAGGugUuuuuggugcugcCCGGGGGCUUuguuauuaaaGGCCAauuGGa -3' miRNA: 3'- -CUGUCCugG------------GGCCCCCGAG----------UCGGU---CC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 42837 | 0.69 | 0.451295 |
Target: 5'- gGAuCAGGGCCUCGaGGGC-C-GCCAGGc -3' miRNA: 3'- -CU-GUCCUGGGGCcCCCGaGuCGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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