miRNA display CGI


Results 141 - 160 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 14847 0.75 0.189414
Target:  5'- -cCGGGGCCgCGGGaGGCcgagggggCAGCCAGGg -3'
miRNA:   3'- cuGUCCUGGgGCCC-CCGa-------GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 41052 0.78 0.119724
Target:  5'- cGCGGcGGCCCUGGGGGcCUCgggguggagggaGGCCAGGg -3'
miRNA:   3'- cUGUC-CUGGGGCCCCC-GAG------------UCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 2150 0.7 0.377422
Target:  5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3'
miRNA:   3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 3082 0.7 0.377422
Target:  5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3'
miRNA:   3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 63365 0.68 0.4956
Target:  5'- cACAGGGCCCUccuGGGGCUCAuguuuaaaCCAGa -3'
miRNA:   3'- cUGUCCUGGGGc--CCCCGAGUc-------GGUCc -5'
28883 5' -63.5 NC_006146.1 + 51582 0.68 0.486575
Target:  5'- cGGgAGGGgCCCGGGGG---AGCCAGa -3'
miRNA:   3'- -CUgUCCUgGGGCCCCCgagUCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 108994 0.68 0.477629
Target:  5'- --aGGGACCCaCGcucaGGGGCUUguAGuCCAGGg -3'
miRNA:   3'- cugUCCUGGG-GC----CCCCGAG--UC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 76915 0.68 0.459986
Target:  5'- --gAGGugaCCGcGGGGCUgCAGCCGGGu -3'
miRNA:   3'- cugUCCuggGGC-CCCCGA-GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 62507 0.68 0.459986
Target:  5'- gGACAGGugUuuuuggugcugcCCGGGGGCUUuguuauuaaaGGCCAauuGGa -3'
miRNA:   3'- -CUGUCCugG------------GGCCCCCGAG----------UCGGU---CC- -5'
28883 5' -63.5 NC_006146.1 + 42837 0.69 0.451295
Target:  5'- gGAuCAGGGCCUCGaGGGC-C-GCCAGGc -3'
miRNA:   3'- -CU-GUCCUGGGGCcCCCGaGuCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 51643 0.69 0.442694
Target:  5'- aGGCucuGGACuCCCaGGGGGC-CAgggccgguGCCGGGa -3'
miRNA:   3'- -CUGu--CCUG-GGG-CCCCCGaGU--------CGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 3717 0.69 0.434187
Target:  5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3'
miRNA:   3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 2785 0.69 0.434187
Target:  5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3'
miRNA:   3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 1853 0.69 0.434187
Target:  5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3'
miRNA:   3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 921 0.69 0.434187
Target:  5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3'
miRNA:   3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 71362 0.69 0.417462
Target:  5'- -----uGCCCCGGGGGCUCGGacuuCCAGc -3'
miRNA:   3'- cuguccUGGGGCCCCCGAGUC----GGUCc -5'
28883 5' -63.5 NC_006146.1 + 162035 0.69 0.417462
Target:  5'- --uGGGAgCCUGGGGGCggGGgCAGGc -3'
miRNA:   3'- cugUCCUgGGGCCCCCGagUCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 135950 0.7 0.385221
Target:  5'- cGCAGGggugccacgucACCCCGGGGuGCUgGGgUGGGg -3'
miRNA:   3'- cUGUCC-----------UGGGGCCCC-CGAgUCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 32120 0.7 0.385221
Target:  5'- cGCAGGggugccacgucACCCCGGGGuGCUgGGgUGGGg -3'
miRNA:   3'- cUGUCC-----------UGGGGCCCC-CGAgUCgGUCC- -5'
28883 5' -63.5 NC_006146.1 + 29588 1.08 0.000846
Target:  5'- gGACAGGACCCCGGGGGCUCAGCCAGGc -3'
miRNA:   3'- -CUGUCCUGGGGCCCCCGAGUCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.