Results 61 - 80 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 142191 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 141922 | 0.67 | 0.56065 |
Target: 5'- gGACuggAGGGCCCUGGGaGGCcccugUCcGCgAGGg -3' miRNA: 3'- -CUG---UCCUGGGGCCC-CCG-----AGuCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 157581 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 154503 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 151425 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 148347 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 145269 | 0.67 | 0.551187 |
Target: 5'- aACGGGGCUCagaGGGGaGCggAGaCCAGGa -3' miRNA: 3'- cUGUCCUGGGg--CCCC-CGagUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 44955 | 0.74 | 0.208044 |
Target: 5'- cGCGGGgagGCCCCGGGGGaCUCgaccgcgguGGCCGGa -3' miRNA: 3'- cUGUCC---UGGGGCCCCC-GAG---------UCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 170203 | 0.75 | 0.184991 |
Target: 5'- -cCGGGGCCUggCGGGGGC-CAGCgCGGGg -3' miRNA: 3'- cuGUCCUGGG--GCCCCCGaGUCG-GUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 169272 | 0.75 | 0.184991 |
Target: 5'- -cCGGGGCCUggCGGGGGC-CAGCgCGGGg -3' miRNA: 3'- cuGUCCUGGG--GCCCCCGaGUCG-GUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 168340 | 0.75 | 0.184991 |
Target: 5'- -cCGGGGCCUggCGGGGGC-CAGCgCGGGg -3' miRNA: 3'- cuGUCCUGGG--GCCCCCGaGUCG-GUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 167408 | 0.75 | 0.184991 |
Target: 5'- -cCGGGGCCUggCGGGGGC-CAGCgCGGGg -3' miRNA: 3'- cuGUCCUGGG--GCCCCCGaGUCG-GUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 53637 | 0.75 | 0.184991 |
Target: 5'- cGGCAGGAUCgC-GGGGCUCAGUCAGc -3' miRNA: 3'- -CUGUCCUGGgGcCCCCGAGUCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 149821 | 0.75 | 0.176418 |
Target: 5'- aACAGG-CUCCGGGuGGUgugggCGGCCAGGg -3' miRNA: 3'- cUGUCCuGGGGCCC-CCGa----GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 3722 | 0.76 | 0.152788 |
Target: 5'- aGACAGGGuCUCUGGGGGCcgcguggcccuUCAGcCCGGGg -3' miRNA: 3'- -CUGUCCU-GGGGCCCCCG-----------AGUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 26987 | 0.77 | 0.142082 |
Target: 5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3' miRNA: 3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 23910 | 0.77 | 0.142082 |
Target: 5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3' miRNA: 3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 20832 | 0.77 | 0.142082 |
Target: 5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3' miRNA: 3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 17754 | 0.77 | 0.142082 |
Target: 5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3' miRNA: 3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 45527 | 0.65 | 0.636517 |
Target: 5'- gGugGGGGCCUgGGccuccuuGGGCUUGGCCGc- -3' miRNA: 3'- -CugUCCUGGGgCC-------CCCGAGUCGGUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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