Results 101 - 120 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28883 | 5' | -63.5 | NC_006146.1 | + | 149821 | 0.75 | 0.176418 |
Target: 5'- aACAGG-CUCCGGGuGGUgugggCGGCCAGGg -3' miRNA: 3'- cUGUCCuGGGGCCC-CCGa----GUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 3722 | 0.76 | 0.152788 |
Target: 5'- aGACAGGGuCUCUGGGGGCcgcguggcccuUCAGcCCGGGg -3' miRNA: 3'- -CUGUCCU-GGGGCCCCCG-----------AGUC-GGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 26987 | 0.77 | 0.142082 |
Target: 5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3' miRNA: 3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 23910 | 0.77 | 0.142082 |
Target: 5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3' miRNA: 3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 20832 | 0.77 | 0.142082 |
Target: 5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3' miRNA: 3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 17754 | 0.77 | 0.142082 |
Target: 5'- -uCAGGGCCCagGGGGGUUCGcguuGCCAGGc -3' miRNA: 3'- cuGUCCUGGGg-CCCCCGAGU----CGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 44955 | 0.74 | 0.208044 |
Target: 5'- cGCGGGgagGCCCCGGGGGaCUCgaccgcgguGGCCGGa -3' miRNA: 3'- cUGUCC---UGGGGCCCCC-GAG---------UCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 137972 | 0.74 | 0.212943 |
Target: 5'- cGGCcGGGCcuCCCGGGGGCcCGGCgGGGu -3' miRNA: 3'- -CUGuCCUG--GGGCCCCCGaGUCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 48580 | 0.74 | 0.217941 |
Target: 5'- -cCGGGGCCUCGGGGGUcagggaGGCCAGa -3' miRNA: 3'- cuGUCCUGGGGCCCCCGag----UCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 34032 | 0.7 | 0.385221 |
Target: 5'- aGGCGGGcguggUCCCGGGGccuauGC-CGGCCGGGg -3' miRNA: 3'- -CUGUCCu----GGGGCCCC-----CGaGUCGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 162399 | 0.7 | 0.385221 |
Target: 5'- -cCGGGACCCCGGuGGGCcaggaUGGUgGGGa -3' miRNA: 3'- cuGUCCUGGGGCC-CCCGa----GUCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 137908 | 0.71 | 0.353929 |
Target: 5'- gGACAGGGCCggggguuCCGGGGGC--AGCCGc- -3' miRNA: 3'- -CUGUCCUGG-------GGCCCCCGagUCGGUcc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 56237 | 0.71 | 0.332903 |
Target: 5'- aGCGGGuCCgCGGGGGCggaGGCgGGGc -3' miRNA: 3'- cUGUCCuGGgGCCCCCGag-UCGgUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 55640 | 0.71 | 0.325869 |
Target: 5'- --gAGGGCCCCcGaGGGGUgcagCAGCCGGa -3' miRNA: 3'- cugUCCUGGGG-C-CCCCGa---GUCGGUCc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 46082 | 0.71 | 0.318945 |
Target: 5'- uGCAGGGCCUCGGGGGCgaagCA-CCGu- -3' miRNA: 3'- cUGUCCUGGGGCCCCCGa---GUcGGUcc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 114221 | 0.72 | 0.285991 |
Target: 5'- aGCAGGgccaGCCCCaGGGGGCcCGGCaccuCAGGg -3' miRNA: 3'- cUGUCC----UGGGG-CCCCCGaGUCG----GUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 54601 | 0.72 | 0.285991 |
Target: 5'- gGAgAGGACCgCGGGGGCgccaucCGGCCGc- -3' miRNA: 3'- -CUgUCCUGGgGCCCCCGa-----GUCGGUcc -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 49521 | 0.72 | 0.273581 |
Target: 5'- cGGCGGGugaUCCGGGGGCUCcuCUGGGg -3' miRNA: 3'- -CUGUCCug-GGGCCCCCGAGucGGUCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 156721 | 0.73 | 0.244449 |
Target: 5'- -cCAGG-CUCCGGGGGUcCAGCCuGGc -3' miRNA: 3'- cuGUCCuGGGGCCCCCGaGUCGGuCC- -5' |
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28883 | 5' | -63.5 | NC_006146.1 | + | 57342 | 0.74 | 0.223038 |
Target: 5'- gGGCGGGGCCCCGGGuG-UCGGUgAGGg -3' miRNA: 3'- -CUGUCCUGGGGCCCcCgAGUCGgUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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