miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28883 5' -63.5 NC_006146.1 + 287 0.71 0.340049
Target:  5'- -cCGGGAagaCCCGGGGGCg-GGCCcGGc -3'
miRNA:   3'- cuGUCCUg--GGGCCCCCGagUCGGuCC- -5'
28883 5' -63.5 NC_006146.1 + 580 0.66 0.608524
Target:  5'- gGAgAGGGgCC-GGGGGCgCGGCCcGGc -3'
miRNA:   3'- -CUgUCCUgGGgCCCCCGaGUCGGuCC- -5'
28883 5' -63.5 NC_006146.1 + 921 0.69 0.434187
Target:  5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3'
miRNA:   3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 1218 0.7 0.377422
Target:  5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3'
miRNA:   3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 1332 0.66 0.626859
Target:  5'- cGACGcgcgcucGGGCCCCGGGGaagccccccGCUC-GCCccucGGGu -3'
miRNA:   3'- -CUGU-------CCUGGGGCCCC---------CGAGuCGG----UCC- -5'
28883 5' -63.5 NC_006146.1 + 1511 0.66 0.608524
Target:  5'- gGAgAGGGgCC-GGGGGCgCGGCCcGGc -3'
miRNA:   3'- -CUgUCCUgGGgCCCCCGaGUCGGuCC- -5'
28883 5' -63.5 NC_006146.1 + 1853 0.69 0.434187
Target:  5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3'
miRNA:   3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 2150 0.7 0.377422
Target:  5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3'
miRNA:   3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 2264 0.66 0.626859
Target:  5'- cGACGcgcgcucGGGCCCCGGGGaagccccccGCUC-GCCccucGGGu -3'
miRNA:   3'- -CUGU-------CCUGGGGCCCC---------CGAGuCGG----UCC- -5'
28883 5' -63.5 NC_006146.1 + 2443 0.66 0.608524
Target:  5'- gGAgAGGGgCC-GGGGGCgCGGCCcGGc -3'
miRNA:   3'- -CUgUCCUgGGgCCCCCGaGUCGGuCC- -5'
28883 5' -63.5 NC_006146.1 + 2785 0.69 0.434187
Target:  5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3'
miRNA:   3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 3082 0.7 0.377422
Target:  5'- -cCGGGAagaCCCGGGGGCg-GGCCAc- -3'
miRNA:   3'- cuGUCCUg--GGGCCCCCGagUCGGUcc -5'
28883 5' -63.5 NC_006146.1 + 3196 0.66 0.626859
Target:  5'- cGACGcgcgcucGGGCCCCGGGGaagccccccGCUC-GCCccucGGGu -3'
miRNA:   3'- -CUGU-------CCUGGGGCCCC---------CGAGuCGG----UCC- -5'
28883 5' -63.5 NC_006146.1 + 3375 0.66 0.608524
Target:  5'- gGAgAGGGgCC-GGGGGCgCGGCCcGGc -3'
miRNA:   3'- -CUgUCCUgGGgCCCCCGaGUCGGuCC- -5'
28883 5' -63.5 NC_006146.1 + 3717 0.69 0.434187
Target:  5'- -cCGGGACCCCGGGcGCgc-GCCGGc -3'
miRNA:   3'- cuGUCCUGGGGCCCcCGaguCGGUCc -5'
28883 5' -63.5 NC_006146.1 + 3722 0.76 0.152788
Target:  5'- aGACAGGGuCUCUGGGGGCcgcguggcccuUCAGcCCGGGg -3'
miRNA:   3'- -CUGUCCU-GGGGCCCCCG-----------AGUC-GGUCC- -5'
28883 5' -63.5 NC_006146.1 + 4363 0.66 0.618169
Target:  5'- cGACGuGGccacgGCCCCGcGGGCUCc-CCAGGc -3'
miRNA:   3'- -CUGU-CC-----UGGGGCcCCCGAGucGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 5064 0.66 0.589286
Target:  5'- uGCGGGGCUggCCGuuGGaGGCguccacgCGGCCAGGg -3'
miRNA:   3'- cUGUCCUGG--GGC--CC-CCGa------GUCGGUCC- -5'
28883 5' -63.5 NC_006146.1 + 13107 0.66 0.589286
Target:  5'- gGACcuGGCCCuguuuguggaCGGGGGCUCccgGGCCcacgAGGa -3'
miRNA:   3'- -CUGucCUGGG----------GCCCCCGAG---UCGG----UCC- -5'
28883 5' -63.5 NC_006146.1 + 13419 0.67 0.570158
Target:  5'- -uCAGGGugccuCCCCGGGucccaGGC-CAGCCGGa -3'
miRNA:   3'- cuGUCCU-----GGGGCCC-----CCGaGUCGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.