miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28884 3' -47.9 NC_006146.1 + 78456 0.66 0.997991
Target:  5'- -aUGGCCA-UCCcgGCGCCGc- -3'
miRNA:   3'- agAUCGGUcAGGuaCGUGGCaa -5'
28884 3' -47.9 NC_006146.1 + 168732 0.66 0.997576
Target:  5'- gUCUGGCCA-UCCAgucUGguCCGUa -3'
miRNA:   3'- -AGAUCGGUcAGGU---ACguGGCAa -5'
28884 3' -47.9 NC_006146.1 + 165487 0.66 0.997576
Target:  5'- --aGGCCAggauuGUCCAgaaggagGCACCGUa -3'
miRNA:   3'- agaUCGGU-----CAGGUa------CGUGGCAa -5'
28884 3' -47.9 NC_006146.1 + 160201 0.66 0.997576
Target:  5'- cCUcGCCAGUCUGUGCugCc-- -3'
miRNA:   3'- aGAuCGGUCAGGUACGugGcaa -5'
28884 3' -47.9 NC_006146.1 + 103690 0.67 0.996531
Target:  5'- cCUGGCCGG-CCAgGCgACCGg- -3'
miRNA:   3'- aGAUCGGUCaGGUaCG-UGGCaa -5'
28884 3' -47.9 NC_006146.1 + 158889 0.67 0.996531
Target:  5'- gCU-GCCGGUCUcggGCACCGg- -3'
miRNA:   3'- aGAuCGGUCAGGua-CGUGGCaa -5'
28884 3' -47.9 NC_006146.1 + 120026 0.67 0.995884
Target:  5'- --cGGCCAGUCCggGCACa--- -3'
miRNA:   3'- agaUCGGUCAGGuaCGUGgcaa -5'
28884 3' -47.9 NC_006146.1 + 95193 0.67 0.995141
Target:  5'- cUUGGCCAgGUCCcUGCGCUGc- -3'
miRNA:   3'- aGAUCGGU-CAGGuACGUGGCaa -5'
28884 3' -47.9 NC_006146.1 + 20579 0.67 0.995141
Target:  5'- aCUAGCCGG-CC-UGCGCCc-- -3'
miRNA:   3'- aGAUCGGUCaGGuACGUGGcaa -5'
28884 3' -47.9 NC_006146.1 + 47406 0.67 0.995141
Target:  5'- gUCUGGCCg--CCAUGCugaugaccACCGUUa -3'
miRNA:   3'- -AGAUCGGucaGGUACG--------UGGCAA- -5'
28884 3' -47.9 NC_006146.1 + 106018 0.68 0.989634
Target:  5'- uUCU--UCAGUCCAUGCugGCCGUg -3'
miRNA:   3'- -AGAucGGUCAGGUACG--UGGCAa -5'
28884 3' -47.9 NC_006146.1 + 150581 0.68 0.9881
Target:  5'- gCUGGCCAucGUCCA-GCACCc-- -3'
miRNA:   3'- aGAUCGGU--CAGGUaCGUGGcaa -5'
28884 3' -47.9 NC_006146.1 + 104132 0.68 0.9881
Target:  5'- --cGGCCAGcUUCAUGaCGCCGUa -3'
miRNA:   3'- agaUCGGUC-AGGUAC-GUGGCAa -5'
28884 3' -47.9 NC_006146.1 + 160339 0.69 0.984508
Target:  5'- gCUGGCCacGGUCCAUGuCACgGg- -3'
miRNA:   3'- aGAUCGG--UCAGGUAC-GUGgCaa -5'
28884 3' -47.9 NC_006146.1 + 54072 0.69 0.984508
Target:  5'- cCUGGCCGccgcGUCCcgGCACaCGUc -3'
miRNA:   3'- aGAUCGGU----CAGGuaCGUG-GCAa -5'
28884 3' -47.9 NC_006146.1 + 137820 0.69 0.982429
Target:  5'- ---cGCCGGUCCGgUGCACCu-- -3'
miRNA:   3'- agauCGGUCAGGU-ACGUGGcaa -5'
28884 3' -47.9 NC_006146.1 + 141731 0.69 0.982211
Target:  5'- -aUAGCCAguGUCCAgggacggUGCACCGg- -3'
miRNA:   3'- agAUCGGU--CAGGU-------ACGUGGCaa -5'
28884 3' -47.9 NC_006146.1 + 38242 0.7 0.971978
Target:  5'- aCUGGaCCcGUCUcgGCGCCGUg -3'
miRNA:   3'- aGAUC-GGuCAGGuaCGUGGCAa -5'
28884 3' -47.9 NC_006146.1 + 47337 0.7 0.965334
Target:  5'- cUCcAGCCGGgCCAgGCGCCGUUu -3'
miRNA:   3'- -AGaUCGGUCaGGUaCGUGGCAA- -5'
28884 3' -47.9 NC_006146.1 + 159333 0.72 0.921979
Target:  5'- gCUGGCCGgcGUCuCGUGCGCCGc- -3'
miRNA:   3'- aGAUCGGU--CAG-GUACGUGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.