miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28885 3' -46.8 NC_006146.1 + 63369 0.66 0.999546
Target:  5'- cCCCUGGGCACgagUGuGCUGUuuAUCu -3'
miRNA:   3'- aGGGACCUGUG---AC-CGAUAc-UAG- -5'
28885 3' -46.8 NC_006146.1 + 84490 0.66 0.999282
Target:  5'- cCCCUaccGAUuCUGGCUGUGGUg -3'
miRNA:   3'- aGGGAc--CUGuGACCGAUACUAg -5'
28885 3' -46.8 NC_006146.1 + 57320 0.66 0.999282
Target:  5'- -aCCUGGACGCgUGGCUcucUGGg- -3'
miRNA:   3'- agGGACCUGUG-ACCGAu--ACUag -5'
28885 3' -46.8 NC_006146.1 + 40382 0.66 0.999282
Target:  5'- gCCC-GGAUugUGGCUGcUGAc- -3'
miRNA:   3'- aGGGaCCUGugACCGAU-ACUag -5'
28885 3' -46.8 NC_006146.1 + 14306 0.66 0.999427
Target:  5'- gUCCCUGGA-GCUGGCg------ -3'
miRNA:   3'- -AGGGACCUgUGACCGauacuag -5'
28885 3' -46.8 NC_006146.1 + 55663 0.66 0.999721
Target:  5'- aUCCCUGGGCcucucaGCUgGGCUcccuggGUGAcaUCa -3'
miRNA:   3'- -AGGGACCUG------UGA-CCGA------UACU--AG- -5'
28885 3' -46.8 NC_006146.1 + 52924 0.66 0.999546
Target:  5'- cCCCggGGGCGCUGGCcuc-GUCc -3'
miRNA:   3'- aGGGa-CCUGUGACCGauacUAG- -5'
28885 3' -46.8 NC_006146.1 + 140450 0.66 0.999546
Target:  5'- gUCCUauuuUGGG-ACUGGCUGUGGg- -3'
miRNA:   3'- -AGGG----ACCUgUGACCGAUACUag -5'
28885 3' -46.8 NC_006146.1 + 112455 0.66 0.999721
Target:  5'- gCCgUGGugguCACUGGgCuUGUGGUCg -3'
miRNA:   3'- aGGgACCu---GUGACC-G-AUACUAG- -5'
28885 3' -46.8 NC_006146.1 + 58912 0.67 0.998344
Target:  5'- cUCUCUGGACcCUGGUguuUGUGGg- -3'
miRNA:   3'- -AGGGACCUGuGACCG---AUACUag -5'
28885 3' -46.8 NC_006146.1 + 53719 0.67 0.999107
Target:  5'- cUCUCUGGcACAUgugguggaccaGGCUGUGAUUg -3'
miRNA:   3'- -AGGGACC-UGUGa----------CCGAUACUAG- -5'
28885 3' -46.8 NC_006146.1 + 87646 0.67 0.998896
Target:  5'- uUCUCUGGACAgUGGCa------ -3'
miRNA:   3'- -AGGGACCUGUgACCGauacuag -5'
28885 3' -46.8 NC_006146.1 + 41354 0.67 0.998644
Target:  5'- gCCCaGGGC-CUGGCgGUGGUg -3'
miRNA:   3'- aGGGaCCUGuGACCGaUACUAg -5'
28885 3' -46.8 NC_006146.1 + 67192 0.67 0.998344
Target:  5'- cUCCUUGGGauucCACUGGCcGUGGc- -3'
miRNA:   3'- -AGGGACCU----GUGACCGaUACUag -5'
28885 3' -46.8 NC_006146.1 + 115089 0.68 0.996531
Target:  5'- aCCCaGG-CGCUGGCUGUacUCa -3'
miRNA:   3'- aGGGaCCuGUGACCGAUAcuAG- -5'
28885 3' -46.8 NC_006146.1 + 26871 0.68 0.996471
Target:  5'- gCCCUGGACccaggaaACgGGuCUAUGGUUg -3'
miRNA:   3'- aGGGACCUG-------UGaCC-GAUACUAG- -5'
28885 3' -46.8 NC_006146.1 + 23793 0.68 0.996471
Target:  5'- gCCCUGGACccaggaaACgGGuCUAUGGUUg -3'
miRNA:   3'- aGGGACCUG-------UGaCC-GAUACUAG- -5'
28885 3' -46.8 NC_006146.1 + 20715 0.68 0.996471
Target:  5'- gCCCUGGACccaggaaACgGGuCUAUGGUUg -3'
miRNA:   3'- aGGGACCUG-------UGaCC-GAUACUAG- -5'
28885 3' -46.8 NC_006146.1 + 14559 0.68 0.996471
Target:  5'- gCCCUGGACccaggaaACgGGuCUAUGGUUg -3'
miRNA:   3'- aGGGACCUG-------UGaCC-GAUACUAG- -5'
28885 3' -46.8 NC_006146.1 + 60417 0.68 0.997092
Target:  5'- cUCCUGGAC-CUGGCcgggGUGGa- -3'
miRNA:   3'- aGGGACCUGuGACCGa---UACUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.