miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28886 3' -55.1 NC_006146.1 + 165508 0.67 0.890208
Target:  5'- ---aGGCACCGuauucucGgAGCAGCCACAUgAg -3'
miRNA:   3'- cagaUCGUGGU-------CgUCGUCGGUGUAgU- -5'
28886 3' -55.1 NC_006146.1 + 102871 0.67 0.883904
Target:  5'- -aCUgAGCGCCAagaAGCAGCCGCAg-- -3'
miRNA:   3'- caGA-UCGUGGUcg-UCGUCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 14116 0.67 0.883904
Target:  5'- uGUCggGGCuGCUGGCGGCGGCCuACAg-- -3'
miRNA:   3'- -CAGa-UCG-UGGUCGUCGUCGG-UGUagu -5'
28886 3' -55.1 NC_006146.1 + 78082 0.67 0.883904
Target:  5'- -cCUGGUACC-GCAGCccccuuuGCCACAUa- -3'
miRNA:   3'- caGAUCGUGGuCGUCGu------CGGUGUAgu -5'
28886 3' -55.1 NC_006146.1 + 42438 0.67 0.883904
Target:  5'- -gCUGGgugcgcgcCGCCAGCauGGCGGCCGgGUCGu -3'
miRNA:   3'- caGAUC--------GUGGUCG--UCGUCGGUgUAGU- -5'
28886 3' -55.1 NC_006146.1 + 52658 0.67 0.883904
Target:  5'- cUCUGGCccCCAGUAcgugcGCAGCCGCcUCu -3'
miRNA:   3'- cAGAUCGu-GGUCGU-----CGUCGGUGuAGu -5'
28886 3' -55.1 NC_006146.1 + 32115 0.67 0.876678
Target:  5'- ---aAGCACgCAG-GGguGCCACGUCAc -3'
miRNA:   3'- cagaUCGUG-GUCgUCguCGGUGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 135945 0.67 0.876678
Target:  5'- ---aAGCACgCAG-GGguGCCACGUCAc -3'
miRNA:   3'- cagaUCGUG-GUCgUCguCGGUGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 48750 0.67 0.869224
Target:  5'- uUCUccuuGCGCcCGGCcuccAGCAGCCGCcgCAg -3'
miRNA:   3'- cAGAu---CGUG-GUCG----UCGUCGGUGuaGU- -5'
28886 3' -55.1 NC_006146.1 + 130512 0.67 0.861548
Target:  5'- gGUCUagGGUGCUGuCAGCAGCCACAa-- -3'
miRNA:   3'- -CAGA--UCGUGGUcGUCGUCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 117163 0.67 0.861548
Target:  5'- cGUCUucGCcCCGGC-GCAGCCGCGg-- -3'
miRNA:   3'- -CAGAu-CGuGGUCGuCGUCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 56434 0.67 0.861548
Target:  5'- aUCgcGCACCAGCAccuGCugGGCCAgAUCu -3'
miRNA:   3'- cAGauCGUGGUCGU---CG--UCGGUgUAGu -5'
28886 3' -55.1 NC_006146.1 + 47002 0.67 0.861548
Target:  5'- cGUC-GG-ACCGGCAGCGGCCcgGUCGg -3'
miRNA:   3'- -CAGaUCgUGGUCGUCGUCGGugUAGU- -5'
28886 3' -55.1 NC_006146.1 + 114465 0.68 0.845553
Target:  5'- aUCUGGC-CCAGCAGguGCUgguGCG-CGa -3'
miRNA:   3'- cAGAUCGuGGUCGUCguCGG---UGUaGU- -5'
28886 3' -55.1 NC_006146.1 + 100363 0.68 0.845553
Target:  5'- cUCaAGacgaGCCAGCcgGGCAGCCAUGUCc -3'
miRNA:   3'- cAGaUCg---UGGUCG--UCGUCGGUGUAGu -5'
28886 3' -55.1 NC_006146.1 + 114969 0.68 0.820062
Target:  5'- ---gGGCACgCAGCAGCccacGGCCgcggACAUCAa -3'
miRNA:   3'- cagaUCGUG-GUCGUCG----UCGG----UGUAGU- -5'
28886 3' -55.1 NC_006146.1 + 126188 0.69 0.783619
Target:  5'- aUCaGGCcgGCCAGCGGgGGCCACGg-- -3'
miRNA:   3'- cAGaUCG--UGGUCGUCgUCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 43254 0.69 0.77413
Target:  5'- ---cGGCGCCAGC-GCGGCCugGaCAa -3'
miRNA:   3'- cagaUCGUGGUCGuCGUCGGugUaGU- -5'
28886 3' -55.1 NC_006146.1 + 46583 0.7 0.754763
Target:  5'- ----uGCGCCAGCAGCgucauGGCCACGa-- -3'
miRNA:   3'- cagauCGUGGUCGUCG-----UCGGUGUagu -5'
28886 3' -55.1 NC_006146.1 + 13645 0.7 0.753782
Target:  5'- aUCaAGCGCCggacacaGGCAGCGGCCACc--- -3'
miRNA:   3'- cAGaUCGUGG-------UCGUCGUCGGUGuagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.