miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28886 5' -58.3 NC_006146.1 + 76880 0.66 0.802853
Target:  5'- gGGCCGUGCcccuGCcgGGCCGCacgUGGGAGCc- -3'
miRNA:   3'- -CCGGUGCGu---UG--UCGGUG---ACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 86247 0.66 0.793932
Target:  5'- gGGCUugGUugacAGCAGgCACgUGGGcAGCAc -3'
miRNA:   3'- -CCGGugCG----UUGUCgGUG-ACCC-UCGUa -5'
28886 5' -58.3 NC_006146.1 + 109498 0.66 0.793932
Target:  5'- uGGCCAC-C-GCAGCCAgcCUGGGA-CAa -3'
miRNA:   3'- -CCGGUGcGuUGUCGGU--GACCCUcGUa -5'
28886 5' -58.3 NC_006146.1 + 162010 0.66 0.784868
Target:  5'- uGGCCACG-AAUuGCUaacuuaaaACUGGGAGCc- -3'
miRNA:   3'- -CCGGUGCgUUGuCGG--------UGACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 128791 0.66 0.784868
Target:  5'- gGGCCgaaGCGUGAuCGGCCACacaGGGAGgGg -3'
miRNA:   3'- -CCGG---UGCGUU-GUCGGUGa--CCCUCgUa -5'
28886 5' -58.3 NC_006146.1 + 56848 0.66 0.784868
Target:  5'- uGGCgGCggggGCGGCAGCUuugGCUGGGgcuGGCGg -3'
miRNA:   3'- -CCGgUG----CGUUGUCGG---UGACCC---UCGUa -5'
28886 5' -58.3 NC_006146.1 + 55186 0.67 0.775667
Target:  5'- -cCCAgGCuGCGGCCGCggcgGGcGAGCGUc -3'
miRNA:   3'- ccGGUgCGuUGUCGGUGa---CC-CUCGUA- -5'
28886 5' -58.3 NC_006146.1 + 47630 0.67 0.775667
Target:  5'- aGCCACGUggU-GCUAC-GGGAGCu- -3'
miRNA:   3'- cCGGUGCGuuGuCGGUGaCCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 30339 0.67 0.76634
Target:  5'- uGCCACGCGgugGCAGCCuaugacgaAUUGGGGuGCc- -3'
miRNA:   3'- cCGGUGCGU---UGUCGG--------UGACCCU-CGua -5'
28886 5' -58.3 NC_006146.1 + 53337 0.67 0.756895
Target:  5'- aGGCC-CG--GCGGCCGCgGGGcGGCGUg -3'
miRNA:   3'- -CCGGuGCguUGUCGGUGaCCC-UCGUA- -5'
28886 5' -58.3 NC_006146.1 + 43865 0.67 0.756895
Target:  5'- gGGCCucuggugacacGCGCAGCGuguugcGCagGCUGGGAGCc- -3'
miRNA:   3'- -CCGG-----------UGCGUUGU------CGg-UGACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 25025 0.67 0.747342
Target:  5'- aGGCC-CGC---GGCCAUUGGGgccAGCAa -3'
miRNA:   3'- -CCGGuGCGuugUCGGUGACCC---UCGUa -5'
28886 5' -58.3 NC_006146.1 + 24075 0.67 0.747342
Target:  5'- gGGCUcuACGCuggcGCGGCCucgcCUGGGAcGCGg -3'
miRNA:   3'- -CCGG--UGCGu---UGUCGGu---GACCCU-CGUa -5'
28886 5' -58.3 NC_006146.1 + 165793 0.67 0.747342
Target:  5'- aGCCACGguGgcaCGGCCGgCUagGGGGGCGUc -3'
miRNA:   3'- cCGGUGCguU---GUCGGU-GA--CCCUCGUA- -5'
28886 5' -58.3 NC_006146.1 + 28103 0.67 0.747342
Target:  5'- aGGCC-CGC---GGCCAUUGGGgccAGCAa -3'
miRNA:   3'- -CCGGuGCGuugUCGGUGACCC---UCGUa -5'
28886 5' -58.3 NC_006146.1 + 12713 0.67 0.747342
Target:  5'- aGGCC-CGC---GGCCAUUGGGgccAGCAa -3'
miRNA:   3'- -CCGGuGCGuugUCGGUGACCC---UCGUa -5'
28886 5' -58.3 NC_006146.1 + 15792 0.67 0.747342
Target:  5'- aGGCC-CGC---GGCCAUUGGGgccAGCAa -3'
miRNA:   3'- -CCGGuGCGuugUCGGUGACCC---UCGUa -5'
28886 5' -58.3 NC_006146.1 + 18870 0.67 0.747342
Target:  5'- aGGCC-CGC---GGCCAUUGGGgccAGCAa -3'
miRNA:   3'- -CCGGuGCGuugUCGGUGACCC---UCGUa -5'
28886 5' -58.3 NC_006146.1 + 169275 0.67 0.737689
Target:  5'- gGGCCugGCGGgGGCCAgCgcgGGGucccggGGCGg -3'
miRNA:   3'- -CCGGugCGUUgUCGGU-Ga--CCC------UCGUa -5'
28886 5' -58.3 NC_006146.1 + 167411 0.67 0.737689
Target:  5'- gGGCCugGCGGgGGCCAgCgcgGGGucccggGGCGg -3'
miRNA:   3'- -CCGGugCGUUgUCGGU-Ga--CCC------UCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.