miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28887 3' -50.2 NC_006146.1 + 156516 0.66 0.997625
Target:  5'- -cGCg--GCCCGGAGGGg---AGCGGg -3'
miRNA:   3'- gaCGauuUGGGCCUCUUagcaUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 107366 0.66 0.997625
Target:  5'- -aGCauuACCCGGcuguaaaagucAGAAaagCGUAGCAGg -3'
miRNA:   3'- gaCGauuUGGGCC-----------UCUUa--GCAUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 39990 0.66 0.997227
Target:  5'- gCUGCUGcGGCCCGuAGuggccggugugggCGUAGCAGg -3'
miRNA:   3'- -GACGAU-UUGGGCcUCuua----------GCAUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 147660 0.66 0.996667
Target:  5'- -gGCUGGACUCGGGGcga-GUGGaCGGg -3'
miRNA:   3'- gaCGAUUUGGGCCUCuuagCAUC-GUC- -5'
28887 3' -50.2 NC_006146.1 + 156893 0.66 0.996667
Target:  5'- -gGCUGGACUCGGGGcga-GUGGaCGGg -3'
miRNA:   3'- gaCGAUUUGGGCCUCuuagCAUC-GUC- -5'
28887 3' -50.2 NC_006146.1 + 150737 0.66 0.996667
Target:  5'- -gGCUGGACUCGGGGcga-GUGGaCGGg -3'
miRNA:   3'- gaCGAUUUGGGCCUCuuagCAUC-GUC- -5'
28887 3' -50.2 NC_006146.1 + 153815 0.66 0.996667
Target:  5'- -gGCUGGACUCGGGGcga-GUGGaCGGg -3'
miRNA:   3'- gaCGAUUUGGGCCUCuuagCAUC-GUC- -5'
28887 3' -50.2 NC_006146.1 + 144582 0.66 0.996667
Target:  5'- -gGCUGGACUCGGGGcga-GUGGaCGGg -3'
miRNA:   3'- gaCGAUUUGGGCCUCuuagCAUC-GUC- -5'
28887 3' -50.2 NC_006146.1 + 141504 0.66 0.996667
Target:  5'- -gGCUGGACUCGGGGcga-GUGGaCGGg -3'
miRNA:   3'- gaCGAUUUGGGCCUCuuagCAUC-GUC- -5'
28887 3' -50.2 NC_006146.1 + 157833 0.66 0.996667
Target:  5'- -cGCUGGcCCCGGAGGGgacgGGCAc -3'
miRNA:   3'- gaCGAUUuGGGCCUCUUagcaUCGUc -5'
28887 3' -50.2 NC_006146.1 + 143302 0.66 0.996612
Target:  5'- ---gUGGACCCGGAGAGUCuGUcuuggaaGGCGu -3'
miRNA:   3'- gacgAUUUGGGCCUCUUAG-CA-------UCGUc -5'
28887 3' -50.2 NC_006146.1 + 52350 0.66 0.99608
Target:  5'- aUGCUGGAUCUGGAGAuUCu--GCAc -3'
miRNA:   3'- gACGAUUUGGGCCUCUuAGcauCGUc -5'
28887 3' -50.2 NC_006146.1 + 46077 0.66 0.99608
Target:  5'- gCUGCUGcagGGCCuCGGGGGcgaagcaccGUCGcgcgAGCAGc -3'
miRNA:   3'- -GACGAU---UUGG-GCCUCU---------UAGCa---UCGUC- -5'
28887 3' -50.2 NC_006146.1 + 50205 0.66 0.99608
Target:  5'- -gGgUAGGCCCGGGGggUgaGUGGUc- -3'
miRNA:   3'- gaCgAUUUGGGCCUCuuAg-CAUCGuc -5'
28887 3' -50.2 NC_006146.1 + 92482 0.66 0.99608
Target:  5'- aUGU---GCCCGGGGggUUGaAGguGg -3'
miRNA:   3'- gACGauuUGGGCCUCuuAGCaUCguC- -5'
28887 3' -50.2 NC_006146.1 + 8050 0.66 0.995412
Target:  5'- -cGCUGGACCCGGcccuGGGggUGUcuGGCAa -3'
miRNA:   3'- gaCGAUUUGGGCC----UCUuaGCA--UCGUc -5'
28887 3' -50.2 NC_006146.1 + 126031 0.66 0.995412
Target:  5'- gCUGCUGGGCCgGGAGGGacugggcucccUUG-GGUAGg -3'
miRNA:   3'- -GACGAUUUGGgCCUCUU-----------AGCaUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 121349 0.66 0.995412
Target:  5'- aUGCUGGGCCUGGccgg-CGUGGCc- -3'
miRNA:   3'- gACGAUUUGGGCCucuuaGCAUCGuc -5'
28887 3' -50.2 NC_006146.1 + 77998 0.67 0.993795
Target:  5'- uCUGuCUGGACagcaCGGGGggUgGUGGCc- -3'
miRNA:   3'- -GAC-GAUUUGg---GCCUCuuAgCAUCGuc -5'
28887 3' -50.2 NC_006146.1 + 43581 0.67 0.993795
Target:  5'- -aGCguu-CCCGGGGAG-CGgGGCGGg -3'
miRNA:   3'- gaCGauuuGGGCCUCUUaGCaUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.