miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28887 3' -50.2 NC_006146.1 + 8050 0.66 0.995412
Target:  5'- -cGCUGGACCCGGcccuGGGggUGUcuGGCAa -3'
miRNA:   3'- gaCGAUUUGGGCC----UCUuaGCA--UCGUc -5'
28887 3' -50.2 NC_006146.1 + 11626 0.68 0.987722
Target:  5'- aCUGCgagGGCCCcGAGGcccgCGUGGCGGc -3'
miRNA:   3'- -GACGau-UUGGGcCUCUua--GCAUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 12988 0.69 0.977832
Target:  5'- -gGcCUAGGCCCGGGGAGUgGaGGgGGa -3'
miRNA:   3'- gaC-GAUUUGGGCCUCUUAgCaUCgUC- -5'
28887 3' -50.2 NC_006146.1 + 16066 0.69 0.977832
Target:  5'- -gGcCUAGGCCCGGGGAGUgGaGGgGGa -3'
miRNA:   3'- gaC-GAUUUGGGCCUCUUAgCaUCgUC- -5'
28887 3' -50.2 NC_006146.1 + 18462 0.69 0.977832
Target:  5'- aUGCUcuACCCGG-GGAUCGacgAGCu- -3'
miRNA:   3'- gACGAuuUGGGCCuCUUAGCa--UCGuc -5'
28887 3' -50.2 NC_006146.1 + 19144 0.69 0.977832
Target:  5'- -gGcCUAGGCCCGGGGAGUgGaGGgGGa -3'
miRNA:   3'- gaC-GAUUUGGGCCUCUUAgCaUCgUC- -5'
28887 3' -50.2 NC_006146.1 + 22222 0.69 0.977832
Target:  5'- -gGcCUAGGCCCGGGGAGUgGaGGgGGa -3'
miRNA:   3'- gaC-GAUUUGGGCCUCUUAgCaUCgUC- -5'
28887 3' -50.2 NC_006146.1 + 25300 0.69 0.977832
Target:  5'- -gGcCUAGGCCCGGGGAGUgGaGGgGGa -3'
miRNA:   3'- gaC-GAUUUGGGCCUCUUAgCaUCgUC- -5'
28887 3' -50.2 NC_006146.1 + 28378 0.69 0.977832
Target:  5'- -gGcCUAGGCCCGGGGAGUgGaGGgGGa -3'
miRNA:   3'- gaC-GAUUUGGGCCUCUUAgCaUCgUC- -5'
28887 3' -50.2 NC_006146.1 + 28523 1.11 0.008883
Target:  5'- aCUGCUAAACCCGGAGAAUCGUAGCAGa -3'
miRNA:   3'- -GACGAUUUGGGCCUCUUAGCAUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 33007 0.73 0.859448
Target:  5'- -cGCUAccCCCGGGGGAUgGUuaaAGCGGg -3'
miRNA:   3'- gaCGAUuuGGGCCUCUUAgCA---UCGUC- -5'
28887 3' -50.2 NC_006146.1 + 37558 0.67 0.99175
Target:  5'- -aGC-AGACCCGGAGAGacUUGUuGGCuAGg -3'
miRNA:   3'- gaCGaUUUGGGCCUCUU--AGCA-UCG-UC- -5'
28887 3' -50.2 NC_006146.1 + 39990 0.66 0.997227
Target:  5'- gCUGCUGcGGCCCGuAGuggccggugugggCGUAGCAGg -3'
miRNA:   3'- -GACGAU-UUGGGCcUCuua----------GCAUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 42353 0.7 0.959393
Target:  5'- gUGuCUGAGCCgGGAcGucuUCGUGGCGGu -3'
miRNA:   3'- gAC-GAUUUGGgCCU-Cuu-AGCAUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 42971 0.69 0.98017
Target:  5'- -cGCUGAGCgCGGAGu-UUGUGGgCAGc -3'
miRNA:   3'- gaCGAUUUGgGCCUCuuAGCAUC-GUC- -5'
28887 3' -50.2 NC_006146.1 + 43581 0.67 0.993795
Target:  5'- -aGCguu-CCCGGGGAG-CGgGGCGGg -3'
miRNA:   3'- gaCGauuuGGGCCUCUUaGCaUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 46077 0.66 0.99608
Target:  5'- gCUGCUGcagGGCCuCGGGGGcgaagcaccGUCGcgcgAGCAGc -3'
miRNA:   3'- -GACGAU---UUGG-GCCUCU---------UAGCa---UCGUC- -5'
28887 3' -50.2 NC_006146.1 + 46503 0.67 0.992831
Target:  5'- -gGCUuGAGCCCGGAGGcacUCugGGCGGa -3'
miRNA:   3'- gaCGA-UUUGGGCCUCUu--AGcaUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 50205 0.66 0.99608
Target:  5'- -gGgUAGGCCCGGGGggUgaGUGGUc- -3'
miRNA:   3'- gaCgAUUUGGGCCUCuuAg-CAUCGuc -5'
28887 3' -50.2 NC_006146.1 + 52350 0.66 0.99608
Target:  5'- aUGCUGGAUCUGGAGAuUCu--GCAc -3'
miRNA:   3'- gACGAUUUGGGCCUCUuAGcauCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.