miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28887 3' -50.2 NC_006146.1 + 97577 0.81 0.490843
Target:  5'- uCUGCUGGACUCGGAGGAUCa-AGUAGa -3'
miRNA:   3'- -GACGAUUUGGGCCUCUUAGcaUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 143302 0.66 0.996612
Target:  5'- ---gUGGACCCGGAGAGUCuGUcuuggaaGGCGu -3'
miRNA:   3'- gacgAUUUGGGCCUCUUAG-CA-------UCGUc -5'
28887 3' -50.2 NC_006146.1 + 157833 0.66 0.996667
Target:  5'- -cGCUGGcCCCGGAGGGgacgGGCAc -3'
miRNA:   3'- gaCGAUUuGGGCCUCUUagcaUCGUc -5'
28887 3' -50.2 NC_006146.1 + 156516 0.66 0.997625
Target:  5'- -cGCg--GCCCGGAGGGg---AGCGGg -3'
miRNA:   3'- gaCGauuUGGGCCUCUUagcaUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 107085 0.7 0.966428
Target:  5'- -gGCaAGACCUGGAuAGUCGUGGCc- -3'
miRNA:   3'- gaCGaUUUGGGCCUcUUAGCAUCGuc -5'
28887 3' -50.2 NC_006146.1 + 12988 0.69 0.977832
Target:  5'- -gGcCUAGGCCCGGGGAGUgGaGGgGGa -3'
miRNA:   3'- gaC-GAUUUGGGCCUCUUAgCaUCgUC- -5'
28887 3' -50.2 NC_006146.1 + 19144 0.69 0.977832
Target:  5'- -gGcCUAGGCCCGGGGAGUgGaGGgGGa -3'
miRNA:   3'- gaC-GAUUUGGGCCUCUUAgCaUCgUC- -5'
28887 3' -50.2 NC_006146.1 + 22222 0.69 0.977832
Target:  5'- -gGcCUAGGCCCGGGGAGUgGaGGgGGa -3'
miRNA:   3'- gaC-GAUUUGGGCCUCUUAgCaUCgUC- -5'
28887 3' -50.2 NC_006146.1 + 170568 0.67 0.990545
Target:  5'- uCUGCUcccguuGGCCgGGAGAAUgacagcugggCGUGGCGa -3'
miRNA:   3'- -GACGAu-----UUGGgCCUCUUA----------GCAUCGUc -5'
28887 3' -50.2 NC_006146.1 + 126031 0.66 0.995412
Target:  5'- gCUGCUGGGCCgGGAGGGacugggcucccUUG-GGUAGg -3'
miRNA:   3'- -GACGAUUUGGgCCUCUU-----------AGCaUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 28378 0.69 0.977832
Target:  5'- -gGcCUAGGCCCGGGGAGUgGaGGgGGa -3'
miRNA:   3'- gaC-GAUUUGGGCCUCUUAgCaUCgUC- -5'
28887 3' -50.2 NC_006146.1 + 33007 0.73 0.859448
Target:  5'- -cGCUAccCCCGGGGGAUgGUuaaAGCGGg -3'
miRNA:   3'- gaCGAUuuGGGCCUCUUAgCA---UCGUC- -5'
28887 3' -50.2 NC_006146.1 + 50205 0.66 0.99608
Target:  5'- -gGgUAGGCCCGGGGggUgaGUGGUc- -3'
miRNA:   3'- gaCgAUUUGGGCCUCuuAg-CAUCGuc -5'
28887 3' -50.2 NC_006146.1 + 142343 0.71 0.93244
Target:  5'- -cGCUAcACCCGG-GAuUCGaAGCAGu -3'
miRNA:   3'- gaCGAUuUGGGCCuCUuAGCaUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 25300 0.69 0.977832
Target:  5'- -gGcCUAGGCCCGGGGAGUgGaGGgGGa -3'
miRNA:   3'- gaC-GAUUUGGGCCUCUUAgCaUCgUC- -5'
28887 3' -50.2 NC_006146.1 + 46077 0.66 0.99608
Target:  5'- gCUGCUGcagGGCCuCGGGGGcgaagcaccGUCGcgcgAGCAGc -3'
miRNA:   3'- -GACGAU---UUGG-GCCUCU---------UAGCa---UCGUC- -5'
28887 3' -50.2 NC_006146.1 + 107366 0.66 0.997625
Target:  5'- -aGCauuACCCGGcuguaaaagucAGAAaagCGUAGCAGg -3'
miRNA:   3'- gaCGauuUGGGCC-----------UCUUa--GCAUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 42353 0.7 0.959393
Target:  5'- gUGuCUGAGCCgGGAcGucuUCGUGGCGGu -3'
miRNA:   3'- gAC-GAUUUGGgCCU-Cuu-AGCAUCGUC- -5'
28887 3' -50.2 NC_006146.1 + 16066 0.69 0.977832
Target:  5'- -gGcCUAGGCCCGGGGAGUgGaGGgGGa -3'
miRNA:   3'- gaC-GAUUUGGGCCUCUUAgCaUCgUC- -5'
28887 3' -50.2 NC_006146.1 + 128648 0.67 0.99175
Target:  5'- -aGCUGAGCcagcuccucgcgCCGGAGGggGUCGUuGGCAa -3'
miRNA:   3'- gaCGAUUUG------------GGCCUCU--UAGCA-UCGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.