miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28887 5' -54 NC_006146.1 + 64534 0.66 0.970907
Target:  5'- aGCUGUUUCacaaaguuguAGUCUCGGGUGUugGGCa -3'
miRNA:   3'- cUGACGAAGc---------UUAGGGCCCACA--UCGc -5'
28887 5' -54 NC_006146.1 + 142377 0.66 0.957684
Target:  5'- -uCUGCUaCGAuUCuCCGGGUuUAGCa -3'
miRNA:   3'- cuGACGAaGCUuAG-GGCCCAcAUCGc -5'
28887 5' -54 NC_006146.1 + 55942 0.67 0.951397
Target:  5'- gGGCUGCUgcgugccccccgccaUCGccgCCCaGGG-GUAGCGg -3'
miRNA:   3'- -CUGACGA---------------AGCuuaGGG-CCCaCAUCGC- -5'
28887 5' -54 NC_006146.1 + 155792 0.68 0.920189
Target:  5'- uGGCUGUguguagUGugugCCUGGGUGUGGUGg -3'
miRNA:   3'- -CUGACGaa----GCuua-GGGCCCACAUCGC- -5'
28887 5' -54 NC_006146.1 + 143481 0.68 0.920189
Target:  5'- uGGCUGUguguagUGugugCCUGGGUGUGGUGg -3'
miRNA:   3'- -CUGACGaa----GCuua-GGGCCCACAUCGC- -5'
28887 5' -54 NC_006146.1 + 146559 0.68 0.920189
Target:  5'- uGGCUGUguguagUGugugCCUGGGUGUGGUGg -3'
miRNA:   3'- -CUGACGaa----GCuua-GGGCCCACAUCGC- -5'
28887 5' -54 NC_006146.1 + 149637 0.68 0.920189
Target:  5'- uGGCUGUguguagUGugugCCUGGGUGUGGUGg -3'
miRNA:   3'- -CUGACGaa----GCuua-GGGCCCACAUCGC- -5'
28887 5' -54 NC_006146.1 + 152714 0.68 0.920189
Target:  5'- uGGCUGUguguagUGugugCCUGGGUGUGGUGg -3'
miRNA:   3'- -CUGACGaa----GCuua-GGGCCCACAUCGC- -5'
28887 5' -54 NC_006146.1 + 138795 0.68 0.902165
Target:  5'- gGAgaGCUUCGGAUgggCCCGGGguugGUgAGCu -3'
miRNA:   3'- -CUgaCGAAGCUUA---GGGCCCa---CA-UCGc -5'
28887 5' -54 NC_006146.1 + 37181 0.71 0.810111
Target:  5'- -cUUGCUUUGAAUguggCCCGGGUG-GGCa -3'
miRNA:   3'- cuGACGAAGCUUA----GGGCCCACaUCGc -5'
28887 5' -54 NC_006146.1 + 60945 0.74 0.654093
Target:  5'- aGACUGCUuucaUUGAggCCCGGGgGUGGgGg -3'
miRNA:   3'- -CUGACGA----AGCUuaGGGCCCaCAUCgC- -5'
28887 5' -54 NC_006146.1 + 28558 1.08 0.005967
Target:  5'- uGACUGCUUCGAAUCCCGGGUGUAGCGc -3'
miRNA:   3'- -CUGACGAAGCUUAGGGCCCACAUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.