miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28888 3' -51.5 NC_006146.1 + 64690 0.66 0.992718
Target:  5'- uGUAGCCAaaagauugucuCCUCCAgcaUGGccaccaGUGUGCAg -3'
miRNA:   3'- gCGUUGGU-----------GGAGGU---ACCaa----UACACGU- -5'
28888 3' -51.5 NC_006146.1 + 65002 0.66 0.992718
Target:  5'- aGac-CCGCUUCCcUGGUUAUGgGCAc -3'
miRNA:   3'- gCguuGGUGGAGGuACCAAUACaCGU- -5'
28888 3' -51.5 NC_006146.1 + 69996 0.66 0.990416
Target:  5'- gCGUAugCguggacugGCCUCCAUGGUgAUGaGCu -3'
miRNA:   3'- -GCGUugG--------UGGAGGUACCAaUACaCGu -5'
28888 3' -51.5 NC_006146.1 + 142672 0.66 0.989894
Target:  5'- uCGCAGCCACCugcccUCCGgcugGGUcggacggucugGUGCGu -3'
miRNA:   3'- -GCGUUGGUGG-----AGGUa---CCAaua--------CACGU- -5'
28888 3' -51.5 NC_006146.1 + 102864 0.66 0.987578
Target:  5'- gGCAGCCGCCaCC-UGGUcGUG-GCc -3'
miRNA:   3'- gCGUUGGUGGaGGuACCAaUACaCGu -5'
28888 3' -51.5 NC_006146.1 + 110864 0.66 0.985935
Target:  5'- aGCGGCUGCUgaaCGUGGUaaguUAUGUGUg -3'
miRNA:   3'- gCGUUGGUGGag-GUACCA----AUACACGu -5'
28888 3' -51.5 NC_006146.1 + 69659 0.68 0.972382
Target:  5'- cCGCGGuCCuCCUCCAgcugGGggGUG-GCAu -3'
miRNA:   3'- -GCGUU-GGuGGAGGUa---CCaaUACaCGU- -5'
28888 3' -51.5 NC_006146.1 + 71281 0.68 0.972382
Target:  5'- aGUuuCCACCacCCGUGGgcagUUGUGUGCu -3'
miRNA:   3'- gCGuuGGUGGa-GGUACC----AAUACACGu -5'
28888 3' -51.5 NC_006146.1 + 137969 0.68 0.970636
Target:  5'- uCGCGGCCggGCCUCCcgggggcccggcgggGUGGggg-GUGCGc -3'
miRNA:   3'- -GCGUUGG--UGGAGG---------------UACCaauaCACGU- -5'
28888 3' -51.5 NC_006146.1 + 60095 0.68 0.969429
Target:  5'- gGCAAUCGCCgggCCGguugGcGUUcUGUGCAa -3'
miRNA:   3'- gCGUUGGUGGa--GGUa---C-CAAuACACGU- -5'
28888 3' -51.5 NC_006146.1 + 50905 0.68 0.959231
Target:  5'- uGCGGCCuggGCCUCCGUGcccaagAUGUGUc -3'
miRNA:   3'- gCGUUGG---UGGAGGUACcaa---UACACGu -5'
28888 3' -51.5 NC_006146.1 + 52676 0.69 0.95126
Target:  5'- gCGCAGCCGCCUCUccgagAUGGUcgcugccGUGUc -3'
miRNA:   3'- -GCGUUGGUGGAGG-----UACCAaua----CACGu -5'
28888 3' -51.5 NC_006146.1 + 73776 0.7 0.932353
Target:  5'- aGCAACCACCgCCuu-GUUGUGUGa- -3'
miRNA:   3'- gCGUUGGUGGaGGuacCAAUACACgu -5'
28888 3' -51.5 NC_006146.1 + 142492 0.71 0.903019
Target:  5'- cCGgAGCCGCCUCCuUGGUUcUGUcCAc -3'
miRNA:   3'- -GCgUUGGUGGAGGuACCAAuACAcGU- -5'
28888 3' -51.5 NC_006146.1 + 133061 0.73 0.808561
Target:  5'- uCGcCGGCCACUUCUGUGGcacUGUGUGCc -3'
miRNA:   3'- -GC-GUUGGUGGAGGUACCa--AUACACGu -5'
28888 3' -51.5 NC_006146.1 + 147957 0.76 0.66911
Target:  5'- aGCAGCCgGCCUUCAuucccuggaUGGUcGUGUGCAu -3'
miRNA:   3'- gCGUUGG-UGGAGGU---------ACCAaUACACGU- -5'
28888 3' -51.5 NC_006146.1 + 28371 1.1 0.007039
Target:  5'- cCGCAACCACCUCCAUGGUUAUGUGCAg -3'
miRNA:   3'- -GCGUUGGUGGAGGUACCAAUACACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.