miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28888 5' -56.4 NC_006146.1 + 43632 0.66 0.892479
Target:  5'- aGUGGGCGGcggggcguGGCCGccugGGGAGaggggccCGGCUCg -3'
miRNA:   3'- aCACCUGUC--------UUGGU----UCCUCc------GCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 42760 0.66 0.885698
Target:  5'- --cGGcaGCAGGGCCGacAGGugcAGGCGGCg- -3'
miRNA:   3'- acaCC--UGUCUUGGU--UCC---UCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 120514 0.66 0.885698
Target:  5'- --aGGACGcGAGCCGcguGGAugcGGCGGCg- -3'
miRNA:   3'- acaCCUGU-CUUGGUu--CCU---CCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 115371 0.66 0.885698
Target:  5'- cGUGGcgGCGGAGCU--GGAGGCccuggccGCUCg -3'
miRNA:   3'- aCACC--UGUCUUGGuuCCUCCGc------CGAG- -5'
28888 5' -56.4 NC_006146.1 + 100002 0.66 0.885007
Target:  5'- --gGGAUcgGGAGCgGgcacgucGGGAGGCGGCg- -3'
miRNA:   3'- acaCCUG--UCUUGgU-------UCCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 106031 0.66 0.885007
Target:  5'- cGUaGGccucaaaacACAGAcCCGAGcccuucugcaccuGAGGCGGCUCu -3'
miRNA:   3'- aCA-CC---------UGUCUuGGUUC-------------CUCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 39850 0.66 0.878692
Target:  5'- aGUGGGCcggcgGGGGCUgugugcccggggGAGGAGGCugaGGCUg -3'
miRNA:   3'- aCACCUG-----UCUUGG------------UUCCUCCG---CCGAg -5'
28888 5' -56.4 NC_006146.1 + 77295 0.66 0.878692
Target:  5'- --aGGACAGcAGCCccAGGAgcccGGCGGgUCg -3'
miRNA:   3'- acaCCUGUC-UUGGu-UCCU----CCGCCgAG- -5'
28888 5' -56.4 NC_006146.1 + 122608 0.66 0.878692
Target:  5'- gGUGGAgggcgaGGGGCgGAGGAGGCcggGGCc- -3'
miRNA:   3'- aCACCUg-----UCUUGgUUCCUCCG---CCGag -5'
28888 5' -56.4 NC_006146.1 + 101869 0.66 0.878692
Target:  5'- gGUGG-CGGGG-CGAGGAcGGUGGCg- -3'
miRNA:   3'- aCACCuGUCUUgGUUCCU-CCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 23974 0.66 0.878692
Target:  5'- gGUGGG-GGAGCCGGaGAGGgGGCg- -3'
miRNA:   3'- aCACCUgUCUUGGUUcCUCCgCCGag -5'
28888 5' -56.4 NC_006146.1 + 51678 0.66 0.877979
Target:  5'- --gGGACucAGAAUUAuuaaaccGGGuGGCGGCUCc -3'
miRNA:   3'- acaCCUG--UCUUGGU-------UCCuCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 152856 0.67 0.871466
Target:  5'- -aUGG-CGGAGCCGGcgaugacgguGGAGGUGGCc- -3'
miRNA:   3'- acACCuGUCUUGGUU----------CCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 149778 0.67 0.871466
Target:  5'- -aUGG-CGGAGCCGGcgaugacgguGGAGGUGGCc- -3'
miRNA:   3'- acACCuGUCUUGGUU----------CCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 143623 0.67 0.871466
Target:  5'- -aUGG-CGGAGCCGGcgaugacgguGGAGGUGGCc- -3'
miRNA:   3'- acACCuGUCUUGGUU----------CCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 155934 0.67 0.871466
Target:  5'- -aUGG-CGGAGCCGGcgaugacgguGGAGGUGGCc- -3'
miRNA:   3'- acACCuGUCUUGGUU----------CCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 57338 0.67 0.870732
Target:  5'- cUGgGGGCGGGGCCccgggugucggugAGGGAGGCugcGGCg- -3'
miRNA:   3'- -ACaCCUGUCUUGG-------------UUCCUCCG---CCGag -5'
28888 5' -56.4 NC_006146.1 + 167243 0.67 0.864026
Target:  5'- gGUGuGACAGAACgCuGGuGAGGCaggaGCUCa -3'
miRNA:   3'- aCAC-CUGUCUUG-GuUC-CUCCGc---CGAG- -5'
28888 5' -56.4 NC_006146.1 + 81662 0.67 0.864026
Target:  5'- --cGGAgGGuGCCGGGGAaGCGGCg- -3'
miRNA:   3'- acaCCUgUCuUGGUUCCUcCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 48006 0.67 0.863271
Target:  5'- gGUGG-CGGGaggcuugGCgGGGGAGGCacggcgggccGGCUCg -3'
miRNA:   3'- aCACCuGUCU-------UGgUUCCUCCG----------CCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.