miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28889 5' -50.3 NC_006146.1 + 54689 0.67 0.987961
Target:  5'- -aCAAGCGgACggagCAGACUGUCCu- -3'
miRNA:   3'- uaGUUCGCgUG----GUCUGGCAGGcu -5'
28889 5' -50.3 NC_006146.1 + 62690 0.67 0.987961
Target:  5'- -cCAAGCGCG-CGGugCGUgCGGu -3'
miRNA:   3'- uaGUUCGCGUgGUCugGCAgGCU- -5'
28889 5' -50.3 NC_006146.1 + 141659 0.67 0.987961
Target:  5'- ---uGGCaCACCGGGCCG-CCGGg -3'
miRNA:   3'- uaguUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 144736 0.67 0.987961
Target:  5'- ---uGGCaCACCGGGCCG-CCGGg -3'
miRNA:   3'- uaguUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 157048 0.67 0.987961
Target:  5'- ---uGGCaCACCGGGCCG-CCGGg -3'
miRNA:   3'- uaguUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 147814 0.67 0.987961
Target:  5'- ---uGGCaCACCGGGCCG-CCGGg -3'
miRNA:   3'- uaguUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 153970 0.67 0.987961
Target:  5'- ---uGGCaCACCGGGCCG-CCGGg -3'
miRNA:   3'- uaguUCGcGUGGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 69072 0.67 0.986317
Target:  5'- -cCGAGCGC-UCGGGCCccgCCGAa -3'
miRNA:   3'- uaGUUCGCGuGGUCUGGca-GGCU- -5'
28889 5' -50.3 NC_006146.1 + 166487 0.67 0.986317
Target:  5'- uUCAccAGCcC-CUGGACCGUCCGGa -3'
miRNA:   3'- uAGU--UCGcGuGGUCUGGCAGGCU- -5'
28889 5' -50.3 NC_006146.1 + 3730 0.67 0.982521
Target:  5'- ----cGCGCGCCGGccucCCGUCCcGAa -3'
miRNA:   3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5'
28889 5' -50.3 NC_006146.1 + 2798 0.67 0.982521
Target:  5'- ----cGCGCGCCGGccucCCGUCCcGAa -3'
miRNA:   3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5'
28889 5' -50.3 NC_006146.1 + 1866 0.67 0.982521
Target:  5'- ----cGCGCGCCGGccucCCGUCCcGAa -3'
miRNA:   3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5'
28889 5' -50.3 NC_006146.1 + 934 0.67 0.982521
Target:  5'- ----cGCGCGCCGGccucCCGUCCcGAa -3'
miRNA:   3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5'
28889 5' -50.3 NC_006146.1 + 52649 0.67 0.982521
Target:  5'- cUCuGGCGCAUgAGGgCGUCCa- -3'
miRNA:   3'- uAGuUCGCGUGgUCUgGCAGGcu -5'
28889 5' -50.3 NC_006146.1 + 115645 0.67 0.980348
Target:  5'- -aCGAGcCGCuucgcCCGGGCCGcCCGGg -3'
miRNA:   3'- uaGUUC-GCGu----GGUCUGGCaGGCU- -5'
28889 5' -50.3 NC_006146.1 + 27322 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28889 5' -50.3 NC_006146.1 + 18088 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28889 5' -50.3 NC_006146.1 + 24244 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28889 5' -50.3 NC_006146.1 + 15010 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28889 5' -50.3 NC_006146.1 + 21166 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.