miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28890 5' -50.3 NC_006146.1 + 74561 0.7 0.941835
Target:  5'- -aCAGGCGCugcACCGGGCUGU-CGAa -3'
miRNA:   3'- uaGUUCGCG---UGGUCUGGCAgGCU- -5'
28890 5' -50.3 NC_006146.1 + 20783 0.69 0.946564
Target:  5'- cAUCAAGUGCACguGcaacGCCGUCUa- -3'
miRNA:   3'- -UAGUUCGCGUGguC----UGGCAGGcu -5'
28890 5' -50.3 NC_006146.1 + 57985 0.69 0.951033
Target:  5'- -cCAGGCGCACCAGgacgaGCUGgaggcCCGGg -3'
miRNA:   3'- uaGUUCGCGUGGUC-----UGGCa----GGCU- -5'
28890 5' -50.3 NC_006146.1 + 76384 0.69 0.958819
Target:  5'- --aGGGCGCGCCgggggagGGACCGggggcgCCGAc -3'
miRNA:   3'- uagUUCGCGUGG-------UCUGGCa-----GGCU- -5'
28890 5' -50.3 NC_006146.1 + 56796 0.69 0.962915
Target:  5'- --uGAGCGCGgCGG-CCGUCUGGc -3'
miRNA:   3'- uagUUCGCGUgGUCuGGCAGGCU- -5'
28890 5' -50.3 NC_006146.1 + 130821 0.68 0.966384
Target:  5'- -gCAcGCGCugCAGGCCcUCCGc -3'
miRNA:   3'- uaGUuCGCGugGUCUGGcAGGCu -5'
28890 5' -50.3 NC_006146.1 + 68550 0.68 0.969618
Target:  5'- uUUGAGUGC-CCGGACCGcuggcgagCCGAg -3'
miRNA:   3'- uAGUUCGCGuGGUCUGGCa-------GGCU- -5'
28890 5' -50.3 NC_006146.1 + 33120 0.68 0.969618
Target:  5'- gAUCcGGCGgACCAGGCCcacCCGGa -3'
miRNA:   3'- -UAGuUCGCgUGGUCUGGca-GGCU- -5'
28890 5' -50.3 NC_006146.1 + 154549 0.68 0.972333
Target:  5'- cUCcuGCGUGCCGGACgagggacauuggaUGUCCGAg -3'
miRNA:   3'- uAGuuCGCGUGGUCUG-------------GCAGGCU- -5'
28890 5' -50.3 NC_006146.1 + 112623 0.68 0.975408
Target:  5'- --aGGGCguggaGCAgCAGACCGUCUGGg -3'
miRNA:   3'- uagUUCG-----CGUgGUCUGGCAGGCU- -5'
28890 5' -50.3 NC_006146.1 + 27322 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28890 5' -50.3 NC_006146.1 + 24244 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28890 5' -50.3 NC_006146.1 + 15010 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28890 5' -50.3 NC_006146.1 + 18088 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28890 5' -50.3 NC_006146.1 + 21166 0.68 0.97798
Target:  5'- -cCAAGCGaagcCACCGGACCuUCCa- -3'
miRNA:   3'- uaGUUCGC----GUGGUCUGGcAGGcu -5'
28890 5' -50.3 NC_006146.1 + 115645 0.67 0.980348
Target:  5'- -aCGAGcCGCuucgcCCGGGCCGcCCGGg -3'
miRNA:   3'- uaGUUC-GCGu----GGUCUGGCaGGCU- -5'
28890 5' -50.3 NC_006146.1 + 2798 0.67 0.982521
Target:  5'- ----cGCGCGCCGGccucCCGUCCcGAa -3'
miRNA:   3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5'
28890 5' -50.3 NC_006146.1 + 1866 0.67 0.982521
Target:  5'- ----cGCGCGCCGGccucCCGUCCcGAa -3'
miRNA:   3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5'
28890 5' -50.3 NC_006146.1 + 52649 0.67 0.982521
Target:  5'- cUCuGGCGCAUgAGGgCGUCCa- -3'
miRNA:   3'- uAGuUCGCGUGgUCUgGCAGGcu -5'
28890 5' -50.3 NC_006146.1 + 934 0.67 0.982521
Target:  5'- ----cGCGCGCCGGccucCCGUCCcGAa -3'
miRNA:   3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.