Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28890 | 5' | -50.3 | NC_006146.1 | + | 934 | 0.67 | 0.982521 |
Target: 5'- ----cGCGCGCCGGccucCCGUCCcGAa -3' miRNA: 3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 1866 | 0.67 | 0.982521 |
Target: 5'- ----cGCGCGCCGGccucCCGUCCcGAa -3' miRNA: 3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 2798 | 0.67 | 0.982521 |
Target: 5'- ----cGCGCGCCGGccucCCGUCCcGAa -3' miRNA: 3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 3730 | 0.67 | 0.982521 |
Target: 5'- ----cGCGCGCCGGccucCCGUCCcGAa -3' miRNA: 3'- uaguuCGCGUGGUCu---GGCAGG-CU- -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 13717 | 0.74 | 0.764788 |
Target: 5'- cUCGGGUcCACCAGGCCGgCCGGa -3' miRNA: 3'- uAGUUCGcGUGGUCUGGCaGGCU- -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 13832 | 0.66 | 0.994017 |
Target: 5'- -cCGGGUcCAUCAGGCCGgCCGGa -3' miRNA: 3'- uaGUUCGcGUGGUCUGGCaGGCU- -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 15010 | 0.68 | 0.97798 |
Target: 5'- -cCAAGCGaagcCACCGGACCuUCCa- -3' miRNA: 3'- uaGUUCGC----GUGGUCUGGcAGGcu -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 16795 | 0.74 | 0.764788 |
Target: 5'- cUCGGGUcCACCAGGCCGgCCGGa -3' miRNA: 3'- uAGUUCGcGUGGUCUGGCaGGCU- -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 16910 | 0.66 | 0.994017 |
Target: 5'- -cCGGGUcCAUCAGGCCGgCCGGa -3' miRNA: 3'- uaGUUCGcGUGGUCUGGCaGGCU- -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 18088 | 0.68 | 0.97798 |
Target: 5'- -cCAAGCGaagcCACCGGACCuUCCa- -3' miRNA: 3'- uaGUUCGC----GUGGUCUGGcAGGcu -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 18837 | 0.66 | 0.994864 |
Target: 5'- -cCAAGUGCuuCCAGACC--CCGGg -3' miRNA: 3'- uaGUUCGCGu-GGUCUGGcaGGCU- -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 19873 | 0.74 | 0.764788 |
Target: 5'- cUCGGGUcCACCAGGCCGgCCGGa -3' miRNA: 3'- uAGUUCGcGUGGUCUGGCaGGCU- -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 19987 | 0.66 | 0.994017 |
Target: 5'- -cCGGGUcCAUCAGGCCGgCCGGa -3' miRNA: 3'- uaGUUCGcGUGGUCUGGCaGGCU- -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 20783 | 0.69 | 0.946564 |
Target: 5'- cAUCAAGUGCACguGcaacGCCGUCUa- -3' miRNA: 3'- -UAGUUCGCGUGguC----UGGCAGGcu -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 21166 | 0.68 | 0.97798 |
Target: 5'- -cCAAGCGaagcCACCGGACCuUCCa- -3' miRNA: 3'- uaGUUCGC----GUGGUCUGGcAGGcu -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 22949 | 0.66 | 0.990786 |
Target: 5'- cUCucGGUcCACCAGGCCGgCCGGa -3' miRNA: 3'- uAGu-UCGcGUGGUCUGGCaGGCU- -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 23065 | 0.66 | 0.994017 |
Target: 5'- -cCGGGUcCAUCAGGCCGgCCGGa -3' miRNA: 3'- uaGUUCGcGUGGUCUGGCaGGCU- -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 24244 | 0.68 | 0.97798 |
Target: 5'- -cCAAGCGaagcCACCGGACCuUCCa- -3' miRNA: 3'- uaGUUCGC----GUGGUCUGGcAGGcu -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 26028 | 0.74 | 0.764788 |
Target: 5'- cUCGGGUcCACCAGGCCGgCCGGa -3' miRNA: 3'- uAGUUCGcGUGGUCUGGCaGGCU- -5' |
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28890 | 5' | -50.3 | NC_006146.1 | + | 26143 | 0.66 | 0.994017 |
Target: 5'- -cCGGGUcCAUCAGGCCGgCCGGa -3' miRNA: 3'- uaGUUCGcGUGGUCUGGCaGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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