miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28892 5' -50.1 NC_006146.1 + 157029 0.66 0.996035
Target:  5'- gGGCGGCUGcgGGgGACGCUggcacaCCGGGc -3'
miRNA:   3'- -UUGUCGACuuUCgUUGCGGaa----GGUUC- -5'
28892 5' -50.1 NC_006146.1 + 149854 0.66 0.996035
Target:  5'- -uCGGC-GAAGcGCAGCGUCUcgcccUCCGAGa -3'
miRNA:   3'- uuGUCGaCUUU-CGUUGCGGA-----AGGUUC- -5'
28892 5' -50.1 NC_006146.1 + 42434 0.66 0.996035
Target:  5'- cGCAGCUGGGuGCG-CGCCg-CCAGc -3'
miRNA:   3'- uUGUCGACUUuCGUuGCGGaaGGUUc -5'
28892 5' -50.1 NC_006146.1 + 141640 0.66 0.996035
Target:  5'- gGGCGGCUGcgGGgGACGCUggcacaCCGGGc -3'
miRNA:   3'- -UUGUCGACuuUCgUUGCGGaa----GGUUC- -5'
28892 5' -50.1 NC_006146.1 + 144717 0.66 0.996035
Target:  5'- gGGCGGCUGcgGGgGACGCUggcacaCCGGGc -3'
miRNA:   3'- -UUGUCGACuuUCgUUGCGGaa----GGUUC- -5'
28892 5' -50.1 NC_006146.1 + 147795 0.66 0.996035
Target:  5'- gGGCGGCUGcgGGgGACGCUggcacaCCGGGc -3'
miRNA:   3'- -UUGUCGACuuUCgUUGCGGaa----GGUUC- -5'
28892 5' -50.1 NC_006146.1 + 150873 0.66 0.996035
Target:  5'- gGGCGGCUGcgGGgGACGCUggcacaCCGGGc -3'
miRNA:   3'- -UUGUCGACuuUCgUUGCGGaa----GGUUC- -5'
28892 5' -50.1 NC_006146.1 + 153951 0.66 0.996035
Target:  5'- gGGCGGCUGcgGGgGACGCUggcacaCCGGGc -3'
miRNA:   3'- -UUGUCGACuuUCgUUGCGGaa----GGUUC- -5'
28892 5' -50.1 NC_006146.1 + 42921 0.66 0.996035
Target:  5'- -cCGGCUGucAGCAGCGgCg-CCAAGc -3'
miRNA:   3'- uuGUCGACuuUCGUUGCgGaaGGUUC- -5'
28892 5' -50.1 NC_006146.1 + 165992 0.66 0.995632
Target:  5'- cGACAGCgagGGuccggcucugucaccAGGCGGCGCaggCCGAGa -3'
miRNA:   3'- -UUGUCGa--CU---------------UUCGUUGCGgaaGGUUC- -5'
28892 5' -50.1 NC_006146.1 + 128190 0.66 0.995345
Target:  5'- aGGCGGCccagGggGGCGccgcgGCGCCgggCCAGa -3'
miRNA:   3'- -UUGUCGa---CuuUCGU-----UGCGGaa-GGUUc -5'
28892 5' -50.1 NC_006146.1 + 28769 0.66 0.995345
Target:  5'- cAACAGCcacUGGGAGCAuAC-CCUggggCCGAGg -3'
miRNA:   3'- -UUGUCG---ACUUUCGU-UGcGGAa---GGUUC- -5'
28892 5' -50.1 NC_006146.1 + 168239 0.66 0.995345
Target:  5'- aAACAGCUGAGGGCAguuGgGCUggauggUCCc-- -3'
miRNA:   3'- -UUGUCGACUUUCGU---UgCGGa-----AGGuuc -5'
28892 5' -50.1 NC_006146.1 + 60584 0.66 0.995345
Target:  5'- -uUAcCUGAGAGCAugGCCU-CCGu- -3'
miRNA:   3'- uuGUcGACUUUCGUugCGGAaGGUuc -5'
28892 5' -50.1 NC_006146.1 + 47714 0.66 0.995196
Target:  5'- --aGGUgGGGAGCAGCGCCcggagcucgucgUCCGGGg -3'
miRNA:   3'- uugUCGaCUUUCGUUGCGGa-----------AGGUUC- -5'
28892 5' -50.1 NC_006146.1 + 136734 0.66 0.995043
Target:  5'- -cCGGCUGggGGCGcaccccccacccuCGCCggggcUCCGGGa -3'
miRNA:   3'- uuGUCGACuuUCGUu------------GCGGa----AGGUUC- -5'
28892 5' -50.1 NC_006146.1 + 71258 0.66 0.99456
Target:  5'- --uGGCgGggGGCGgccucuACGCCUUCCu-- -3'
miRNA:   3'- uugUCGaCuuUCGU------UGCGGAAGGuuc -5'
28892 5' -50.1 NC_006146.1 + 117523 0.66 0.99456
Target:  5'- uAACGGCagGAacgcGAGCaAGCGCCgggccagCCAAGa -3'
miRNA:   3'- -UUGUCGa-CU----UUCG-UUGCGGaa-----GGUUC- -5'
28892 5' -50.1 NC_006146.1 + 123453 0.66 0.99456
Target:  5'- --gAGCUcGAGAGCAugGCCcagaacUCCAu- -3'
miRNA:   3'- uugUCGA-CUUUCGUugCGGa-----AGGUuc -5'
28892 5' -50.1 NC_006146.1 + 24379 0.66 0.99456
Target:  5'- -cCAGCUccaGGgcGCGGCGCCUucgcucUCCGGGu -3'
miRNA:   3'- uuGUCGA---CUuuCGUUGCGGA------AGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.