miRNA display CGI


Results 81 - 100 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 141967 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 151201 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 145045 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 86370 0.68 0.99774
Target:  5'- cGuCAGCUGGCCggUCuuGGAUGAGACc -3'
miRNA:   3'- aCuGUCGGCUGGa-AGcuUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 108366 0.68 0.99774
Target:  5'- gGAguGCUGGCCa--GGAGAcCGAGACa -3'
miRNA:   3'- aCUguCGGCUGGaagCUUUU-GCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 157357 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 54665 0.68 0.997896
Target:  5'- -aGCAGCUGGCCc-CGAAucccgccgacaagcgGACGGAGCa -3'
miRNA:   3'- acUGUCGGCUGGaaGCUU---------------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 66297 0.68 0.998114
Target:  5'- aGAUAGUcgCGGCCaucgUCGGAGACGugguAGCa -3'
miRNA:   3'- aCUGUCG--GCUGGa---AGCUUUUGCu---UUG- -5'
28894 3' -47.7 NC_006146.1 + 146798 0.68 0.998939
Target:  5'- gUGcCAGCCG-CCcUCGAcccgcgucccAGGCGAGGCc -3'
miRNA:   3'- -ACuGUCGGCuGGaAGCU----------UUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 128485 0.68 0.998114
Target:  5'- --cCAGCUGcgucucGCCUUCGAGGACGGc-- -3'
miRNA:   3'- acuGUCGGC------UGGAAGCUUUUGCUuug -5'
28894 3' -47.7 NC_006146.1 + 55764 0.68 0.998434
Target:  5'- cGGCGGCgGGCCa--GggGcaGCGAGGCc -3'
miRNA:   3'- aCUGUCGgCUGGaagCuuU--UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 102993 0.68 0.998939
Target:  5'- gGugGGCCGGgCUaUGGAauuGAUGAAGCg -3'
miRNA:   3'- aCugUCGGCUgGAaGCUU---UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 86455 0.68 0.998114
Target:  5'- gGGCAGCUGGgCUUUGAGGGgGcAGCc -3'
miRNA:   3'- aCUGUCGGCUgGAAGCUUUUgCuUUG- -5'
28894 3' -47.7 NC_006146.1 + 147158 0.68 0.99774
Target:  5'- cGGCAGuuGACCcggCGGcgGCGcAGACc -3'
miRNA:   3'- aCUGUCggCUGGaa-GCUuuUGC-UUUG- -5'
28894 3' -47.7 NC_006146.1 + 148123 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 12837 0.68 0.99774
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccuggGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU-----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 110234 0.69 0.997306
Target:  5'- cGGCAGCCGccACCUU-Guc-ACGAAGCc -3'
miRNA:   3'- aCUGUCGGC--UGGAAgCuuuUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 19419 0.69 0.997306
Target:  5'- cGGguGCCaGAUCUUCGAAgccAACGuGGACg -3'
miRNA:   3'- aCUguCGG-CUGGAAGCUU---UUGC-UUUG- -5'
28894 3' -47.7 NC_006146.1 + 25149 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 28227 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.