miRNA display CGI


Results 101 - 120 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 25149 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 89780 0.69 0.996805
Target:  5'- gGACgaggGGCCcauGGCCguggaCGAGGACGAGGCa -3'
miRNA:   3'- aCUG----UCGG---CUGGaa---GCUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 15916 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 52500 0.69 0.996805
Target:  5'- cGACGGCCGAguuggagaUCUgggcgggaaaGAGGACGAGGCc -3'
miRNA:   3'- aCUGUCGGCU--------GGAag--------CUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 22071 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 28227 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 46785 0.69 0.997306
Target:  5'- aUGGCuGGCCGGCCggcgCGAGGGCa---- -3'
miRNA:   3'- -ACUG-UCGGCUGGaa--GCUUUUGcuuug -5'
28894 3' -47.7 NC_006146.1 + 52721 0.7 0.994822
Target:  5'- gGGCGGCCGGCCa--GAAAGCucuuGACc -3'
miRNA:   3'- aCUGUCGGCUGGaagCUUUUGcu--UUG- -5'
28894 3' -47.7 NC_006146.1 + 56802 0.7 0.990741
Target:  5'- cGGCGGCCGuCUggCGG--GCGggGCu -3'
miRNA:   3'- aCUGUCGGCuGGaaGCUuuUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 109606 0.7 0.993974
Target:  5'- gGACGGCCagGGCCUUgGucuuGAAGCGGAGa -3'
miRNA:   3'- aCUGUCGG--CUGGAAgC----UUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 41054 0.7 0.991943
Target:  5'- cGGCGGCCcugggGGCCU-CGggGugGAGGg -3'
miRNA:   3'- aCUGUCGG-----CUGGAaGCuuUugCUUUg -5'
28894 3' -47.7 NC_006146.1 + 80053 0.7 0.990741
Target:  5'- aUGGCAGCCGuCCUagaggCGuAAGGCGgcACu -3'
miRNA:   3'- -ACUGUCGGCuGGAa----GC-UUUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 67043 0.7 0.994822
Target:  5'- cGACAGUCGGCCgggaCGGAGACc---- -3'
miRNA:   3'- aCUGUCGGCUGGaa--GCUUUUGcuuug -5'
28894 3' -47.7 NC_006146.1 + 62359 0.7 0.993017
Target:  5'- aGAUAGCC-ACCcgcuguaCGAGGACGggGCc -3'
miRNA:   3'- aCUGUCGGcUGGaa-----GCUUUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 40007 0.7 0.990741
Target:  5'- cGGCAGCCuuuGACCggUC--AGACGggGCa -3'
miRNA:   3'- aCUGUCGG---CUGGa-AGcuUUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 123939 0.71 0.987919
Target:  5'- cGGCGGCCgGGCCggCGAAAuACGcGGGCa -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUUU-UGC-UUUG- -5'
28894 3' -47.7 NC_006146.1 + 36306 0.71 0.988828
Target:  5'- aGGCGGCUGGCCUUCuuuacugaGggGCa -3'
miRNA:   3'- aCUGUCGGCUGGAAGcuuuug--CuuUG- -5'
28894 3' -47.7 NC_006146.1 + 42089 0.71 0.987919
Target:  5'- gGACcgcGCCGuCCUUCGcgGACGgcGCa -3'
miRNA:   3'- aCUGu--CGGCuGGAAGCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 90270 0.71 0.987919
Target:  5'- aGGCAGUagagguagaGGCCguggUCGAGGACGAGGa -3'
miRNA:   3'- aCUGUCGg--------CUGGa---AGCUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 68875 0.71 0.986279
Target:  5'- cGACAGCCuGGCCcugaUgGAGAugGAGAa -3'
miRNA:   3'- aCUGUCGG-CUGGa---AgCUUUugCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.