Results 81 - 100 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 156859 | 0.67 | 0.999134 |
Target: 5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3' miRNA: 3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 153781 | 0.67 | 0.999134 |
Target: 5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3' miRNA: 3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 150703 | 0.67 | 0.999134 |
Target: 5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3' miRNA: 3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 147626 | 0.67 | 0.999134 |
Target: 5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3' miRNA: 3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 144548 | 0.67 | 0.999134 |
Target: 5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3' miRNA: 3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 141470 | 0.67 | 0.999134 |
Target: 5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3' miRNA: 3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 115697 | 0.67 | 0.999134 |
Target: 5'- aGGCGGCCGACa---GGAGACGc--- -3' miRNA: 3'- aCUGUCGGCUGgaagCUUUUGCuuug -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 113002 | 0.67 | 0.999134 |
Target: 5'- gUGACGGaCuCGGCCUU-GAGgcGAUGGAGCa -3' miRNA: 3'- -ACUGUC-G-GCUGGAAgCUU--UUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 19617 | 0.67 | 0.999134 |
Target: 5'- -cACGGCCcuGGCCUUCGAuauCGAGu- -3' miRNA: 3'- acUGUCGG--CUGGAAGCUuuuGCUUug -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 772 | 0.67 | 0.999298 |
Target: 5'- -uGCAGCCGAgCgu-GAcGACGGGACg -3' miRNA: 3'- acUGUCGGCUgGaagCUuUUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 1703 | 0.67 | 0.999298 |
Target: 5'- -uGCAGCCGAgCgu-GAcGACGGGACg -3' miRNA: 3'- acUGUCGGCUgGaagCUuUUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 122803 | 0.67 | 0.999631 |
Target: 5'- gGGCGGCCGagGCCgcgcugUCGGccgccguGAGCGAGuACg -3' miRNA: 3'- aCUGUCGGC--UGGa-----AGCU-------UUUGCUU-UG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 118680 | 0.67 | 0.999547 |
Target: 5'- ----uGCCcgaGGCCUUCGAGAugGAGGa -3' miRNA: 3'- acuguCGG---CUGGAAGCUUUugCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 9904 | 0.67 | 0.999547 |
Target: 5'- gUGACGGCCaGGCaggaGgcGACGGAGCc -3' miRNA: 3'- -ACUGUCGG-CUGgaagCuuUUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 166523 | 0.67 | 0.999434 |
Target: 5'- aUGGC-GUCGGCCUggGGAGcccGCGggGCc -3' miRNA: 3'- -ACUGuCGGCUGGAagCUUU---UGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 15598 | 0.67 | 0.999434 |
Target: 5'- cGAgGGCgCGGCCUUUGAGAAUu---- -3' miRNA: 3'- aCUgUCG-GCUGGAAGCUUUUGcuuug -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 21028 | 0.67 | 0.999434 |
Target: 5'- cGAguGCCGGggauUCUcgGAGGGCGAGACg -3' miRNA: 3'- aCUguCGGCU----GGAagCUUUUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 3567 | 0.67 | 0.999298 |
Target: 5'- -uGCAGCCGAgCgu-GAcGACGGGACg -3' miRNA: 3'- acUGUCGGCUgGaagCUuUUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 2635 | 0.67 | 0.999298 |
Target: 5'- -uGCAGCCGAgCgu-GAcGACGGGACg -3' miRNA: 3'- acUGUCGGCUgGaagCUuUUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 10456 | 0.67 | 0.999134 |
Target: 5'- cGAgAGCgCcGCCUUCGuGAugGggGCc -3' miRNA: 3'- aCUgUCG-GcUGGAAGCuUUugCuuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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