Results 101 - 120 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 10456 | 0.67 | 0.999134 |
Target: 5'- cGAgAGCgCcGCCUUCGuGAugGggGCc -3' miRNA: 3'- aCUgUCG-GcUGGAAGCuUUugCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 19617 | 0.67 | 0.999134 |
Target: 5'- -cACGGCCcuGGCCUUCGAuauCGAGu- -3' miRNA: 3'- acUGUCGG--CUGGAAGCUuuuGCUUug -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 113002 | 0.67 | 0.999134 |
Target: 5'- gUGACGGaCuCGGCCUU-GAGgcGAUGGAGCa -3' miRNA: 3'- -ACUGUC-G-GCUGGAAgCUU--UUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 115697 | 0.67 | 0.999134 |
Target: 5'- aGGCGGCCGACa---GGAGACGc--- -3' miRNA: 3'- aCUGUCGGCUGgaagCUUUUGCuuug -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 21028 | 0.67 | 0.999434 |
Target: 5'- cGAguGCCGGggauUCUcgGAGGGCGAGACg -3' miRNA: 3'- aCUguCGGCU----GGAagCUUUUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 120504 | 0.66 | 0.999776 |
Target: 5'- cUGGCGGCCGaggacgcgaGCCgcguggaugCGGcgGCGGGACu -3' miRNA: 3'- -ACUGUCGGC---------UGGaa-------GCUuuUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 130107 | 0.66 | 0.999896 |
Target: 5'- uUGAC-GCCGGCUUUCucaGAAaccgcGugGAGACc -3' miRNA: 3'- -ACUGuCGGCUGGAAG---CUU-----UugCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 122956 | 0.66 | 0.999715 |
Target: 5'- -cGCAGCUccuGACCaagaGGGAGCGGGACg -3' miRNA: 3'- acUGUCGG---CUGGaag-CUUUUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 116872 | 0.66 | 0.999715 |
Target: 5'- cGACauGGCCGcCCUcCGGAGGCGccACc -3' miRNA: 3'- aCUG--UCGGCuGGAaGCUUUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 44353 | 0.66 | 0.999776 |
Target: 5'- gUGACcGCgGGCCc-CGggGGCaGAGACa -3' miRNA: 3'- -ACUGuCGgCUGGaaGCuuUUG-CUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 25421 | 0.66 | 0.999776 |
Target: 5'- gGACAcGCCgGACCU---GAAACGAGAg -3' miRNA: 3'- aCUGU-CGG-CUGGAagcUUUUGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 34921 | 0.66 | 0.999821 |
Target: 5'- gGGCAGCgGACCggcagcggccCGGccaccccccgccgGAGCGggGCa -3' miRNA: 3'- aCUGUCGgCUGGaa--------GCU-------------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 32016 | 0.66 | 0.999826 |
Target: 5'- gGACAGaggGGCC-UCG-GGACGAGGCg -3' miRNA: 3'- aCUGUCgg-CUGGaAGCuUUUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 112578 | 0.66 | 0.999826 |
Target: 5'- -uGCAGCUGGCCagggUGGAGuucuccaccccgGCGAAGCg -3' miRNA: 3'- acUGUCGGCUGGaa--GCUUU------------UGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 53896 | 0.66 | 0.999826 |
Target: 5'- gGGCGGCUGGCUUUUGuGAACa---- -3' miRNA: 3'- aCUGUCGGCUGGAAGCuUUUGcuuug -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 74045 | 0.66 | 0.999826 |
Target: 5'- cGGCGGCUGACgCggCaGAGGCuGAAGCg -3' miRNA: 3'- aCUGUCGGCUG-GaaGcUUUUG-CUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 129343 | 0.66 | 0.999854 |
Target: 5'- aGGCGGCCGAguggCUUCuaaagagagagccgGAGAGgGAAGCg -3' miRNA: 3'- aCUGUCGGCUg---GAAG--------------CUUUUgCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 168905 | 0.66 | 0.999858 |
Target: 5'- -cGCAGCgCGACUgucagcagguucUCGGAGACGAGGg -3' miRNA: 3'- acUGUCG-GCUGGa-----------AGCUUUUGCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 50717 | 0.66 | 0.999865 |
Target: 5'- cUGAaAGCCGGCgUugagCGggGGCGAcggGGCg -3' miRNA: 3'- -ACUgUCGGCUGgAa---GCuuUUGCU---UUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 103289 | 0.66 | 0.999865 |
Target: 5'- cUGGCcucGGCCGACCU-CGu--GCGcuACg -3' miRNA: 3'- -ACUG---UCGGCUGGAaGCuuuUGCuuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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