miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 18993 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 15916 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 22071 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 25149 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 46785 0.69 0.997306
Target:  5'- aUGGCuGGCCGGCCggcgCGAGGGCa---- -3'
miRNA:   3'- -ACUG-UCGGCUGGaa--GCUUUUGcuuug -5'
28894 3' -47.7 NC_006146.1 + 145045 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 141967 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 47626 0.68 0.99774
Target:  5'- cGGCAGCCacgugGugCUaCGGGAGCuGAGGCu -3'
miRNA:   3'- aCUGUCGG-----CugGAaGCUUUUG-CUUUG- -5'
28894 3' -47.7 NC_006146.1 + 12837 0.68 0.99774
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccuggGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU-----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 148123 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 151201 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 53115 0.68 0.99774
Target:  5'- aGGCGGcCCGGCCcggGGGAGCGcGACg -3'
miRNA:   3'- aCUGUC-GGCUGGaagCUUUUGCuUUG- -5'
28894 3' -47.7 NC_006146.1 + 147158 0.68 0.99774
Target:  5'- cGGCAGuuGACCcggCGGcgGCGcAGACc -3'
miRNA:   3'- aCUGUCggCUGGaa-GCUuuUGC-UUUG- -5'
28894 3' -47.7 NC_006146.1 + 157357 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 86370 0.68 0.99774
Target:  5'- cGuCAGCUGGCCggUCuuGGAUGAGACc -3'
miRNA:   3'- aCuGUCGGCUGGa-AGcuUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 108366 0.68 0.99774
Target:  5'- gGAguGCUGGCCa--GGAGAcCGAGACa -3'
miRNA:   3'- aCUguCGGCUGGaagCUUUU-GCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 154279 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 54665 0.68 0.997896
Target:  5'- -aGCAGCUGGCCc-CGAAucccgccgacaagcgGACGGAGCa -3'
miRNA:   3'- acUGUCGGCUGGaaGCUU---------------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 128485 0.68 0.998114
Target:  5'- --cCAGCUGcgucucGCCUUCGAGGACGGc-- -3'
miRNA:   3'- acuGUCGGC------UGGAAGCUUUUGCUuug -5'
28894 3' -47.7 NC_006146.1 + 86455 0.68 0.998114
Target:  5'- gGGCAGCUGGgCUUUGAGGGgGcAGCc -3'
miRNA:   3'- aCUGUCGGCUgGAAGCUUUUgCuUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.