miRNA display CGI


Results 61 - 80 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 23787 0.67 0.999298
Target:  5'- aUGGCGGCCcugGACCca-GGAAACGGGu- -3'
miRNA:   3'- -ACUGUCGG---CUGGaagCUUUUGCUUug -5'
28894 3' -47.7 NC_006146.1 + 1703 0.67 0.999298
Target:  5'- -uGCAGCCGAgCgu-GAcGACGGGACg -3'
miRNA:   3'- acUGUCGGCUgGaagCUuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 772 0.67 0.999298
Target:  5'- -uGCAGCCGAgCgu-GAcGACGGGACg -3'
miRNA:   3'- acUGUCGGCUgGaagCUuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 2635 0.67 0.999298
Target:  5'- -uGCAGCCGAgCgu-GAcGACGGGACg -3'
miRNA:   3'- acUGUCGGCUgGaagCUuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 20709 0.67 0.999298
Target:  5'- aUGGCGGCCcugGACCca-GGAAACGGGu- -3'
miRNA:   3'- -ACUGUCGG---CUGGaagCUUUUGCUUug -5'
28894 3' -47.7 NC_006146.1 + 17631 0.67 0.999298
Target:  5'- aUGGCGGCCcugGACCca-GGAAACGGGu- -3'
miRNA:   3'- -ACUGUCGG---CUGGaagCUUUUGCUUug -5'
28894 3' -47.7 NC_006146.1 + 14553 0.67 0.999298
Target:  5'- aUGGCGGCCcugGACCca-GGAAACGGGu- -3'
miRNA:   3'- -ACUGUCGG---CUGGaagCUUUUGCUUug -5'
28894 3' -47.7 NC_006146.1 + 141470 0.67 0.999134
Target:  5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3'
miRNA:   3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 147626 0.67 0.999134
Target:  5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3'
miRNA:   3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 113002 0.67 0.999134
Target:  5'- gUGACGGaCuCGGCCUU-GAGgcGAUGGAGCa -3'
miRNA:   3'- -ACUGUC-G-GCUGGAAgCUU--UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 10456 0.67 0.999134
Target:  5'- cGAgAGCgCcGCCUUCGuGAugGggGCc -3'
miRNA:   3'- aCUgUCG-GcUGGAAGCuUUugCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 19617 0.67 0.999134
Target:  5'- -cACGGCCcuGGCCUUCGAuauCGAGu- -3'
miRNA:   3'- acUGUCGG--CUGGAAGCUuuuGCUUug -5'
28894 3' -47.7 NC_006146.1 + 150703 0.67 0.999134
Target:  5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3'
miRNA:   3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 153781 0.67 0.999134
Target:  5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3'
miRNA:   3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 156859 0.67 0.999134
Target:  5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3'
miRNA:   3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 144548 0.67 0.999134
Target:  5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3'
miRNA:   3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 115697 0.67 0.999134
Target:  5'- aGGCGGCCGACa---GGAGACGc--- -3'
miRNA:   3'- aCUGUCGGCUGgaagCUUUUGCuuug -5'
28894 3' -47.7 NC_006146.1 + 146798 0.68 0.998939
Target:  5'- gUGcCAGCCG-CCcUCGAcccgcgucccAGGCGAGGCc -3'
miRNA:   3'- -ACuGUCGGCuGGaAGCU----------UUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 102993 0.68 0.998939
Target:  5'- gGugGGCCGGgCUaUGGAauuGAUGAAGCg -3'
miRNA:   3'- aCugUCGGCUgGAaGCUU---UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 55764 0.68 0.998434
Target:  5'- cGGCGGCgGGCCa--GggGcaGCGAGGCc -3'
miRNA:   3'- aCUGUCGgCUGGaagCuuU--UGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.