miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 45821 0.74 0.946716
Target:  5'- -cACGGCCG-CC-UCGAAGACGGAGa -3'
miRNA:   3'- acUGUCGGCuGGaAGCUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 46066 0.73 0.962614
Target:  5'- cGAguGCCauagcugcugcagGGCC-UCGggGGCGAAGCa -3'
miRNA:   3'- aCUguCGG-------------CUGGaAGCuuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 46785 0.69 0.997306
Target:  5'- aUGGCuGGCCGGCCggcgCGAGGGCa---- -3'
miRNA:   3'- -ACUG-UCGGCUGGaa--GCUUUUGcuuug -5'
28894 3' -47.7 NC_006146.1 + 47626 0.68 0.99774
Target:  5'- cGGCAGCCacgugGugCUaCGGGAGCuGAGGCu -3'
miRNA:   3'- aCUGUCGG-----CugGAaGCUUUUG-CUUUG- -5'
28894 3' -47.7 NC_006146.1 + 48357 0.67 0.999298
Target:  5'- cUGGCcagcgGGCCGGCCU-CGAGuuccGCGAAc- -3'
miRNA:   3'- -ACUG-----UCGGCUGGAaGCUUu---UGCUUug -5'
28894 3' -47.7 NC_006146.1 + 50717 0.66 0.999865
Target:  5'- cUGAaAGCCGGCgUugagCGggGGCGAcggGGCg -3'
miRNA:   3'- -ACUgUCGGCUGgAa---GCuuUUGCU---UUG- -5'
28894 3' -47.7 NC_006146.1 + 51578 0.67 0.999434
Target:  5'- aGGCGGCgCGGCCgaaggGggGACuGAGGCc -3'
miRNA:   3'- aCUGUCG-GCUGGaag--CuuUUG-CUUUG- -5'
28894 3' -47.7 NC_006146.1 + 51619 0.74 0.942017
Target:  5'- gGACAGCCGGCUgaggUUGAGGGacggugacuacCGGAGCa -3'
miRNA:   3'- aCUGUCGGCUGGa---AGCUUUU-----------GCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 52500 0.69 0.996805
Target:  5'- cGACGGCCGAguuggagaUCUgggcgggaaaGAGGACGAGGCc -3'
miRNA:   3'- aCUGUCGGCU--------GGAag--------CUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 52721 0.7 0.994822
Target:  5'- gGGCGGCCGGCCa--GAAAGCucuuGACc -3'
miRNA:   3'- aCUGUCGGCUGGaagCUUUUGcu--UUG- -5'
28894 3' -47.7 NC_006146.1 + 53115 0.68 0.99774
Target:  5'- aGGCGGcCCGGCCcggGGGAGCGcGACg -3'
miRNA:   3'- aCUGUC-GGCUGGaagCUUUUGCuUUG- -5'
28894 3' -47.7 NC_006146.1 + 53193 0.66 0.999776
Target:  5'- cGGCc-CCGGCCUUgGggGGCGGc-- -3'
miRNA:   3'- aCUGucGGCUGGAAgCuuUUGCUuug -5'
28894 3' -47.7 NC_006146.1 + 53741 0.67 0.999639
Target:  5'- -cGCGGCUGcGCCggggCGAAGACGGgcGGCg -3'
miRNA:   3'- acUGUCGGC-UGGaa--GCUUUUGCU--UUG- -5'
28894 3' -47.7 NC_006146.1 + 53896 0.66 0.999826
Target:  5'- gGGCGGCUGGCUUUUGuGAACa---- -3'
miRNA:   3'- aCUGUCGGCUGGAAGCuUUUGcuuug -5'
28894 3' -47.7 NC_006146.1 + 54665 0.68 0.997896
Target:  5'- -aGCAGCUGGCCc-CGAAucccgccgacaagcgGACGGAGCa -3'
miRNA:   3'- acUGUCGGCUGGaaGCUU---------------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 55474 0.72 0.980326
Target:  5'- cGAUGGCCG-CgggCGAGAACGAGGCc -3'
miRNA:   3'- aCUGUCGGCuGgaaGCUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 55764 0.68 0.998434
Target:  5'- cGGCGGCgGGCCa--GggGcaGCGAGGCc -3'
miRNA:   3'- aCUGUCGgCUGGaagCuuU--UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 56802 0.7 0.990741
Target:  5'- cGGCGGCCGuCUggCGG--GCGggGCu -3'
miRNA:   3'- aCUGUCGGCuGGaaGCUuuUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 57580 0.67 0.999298
Target:  5'- ---gAGCUGACCUUCGggG-CGGu-- -3'
miRNA:   3'- acugUCGGCUGGAAGCuuUuGCUuug -5'
28894 3' -47.7 NC_006146.1 + 59977 0.67 0.999639
Target:  5'- aGuCAGCCGACCUggGGGucAugGAGuGCa -3'
miRNA:   3'- aCuGUCGGCUGGAagCUU--UugCUU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.