miRNA display CGI


Results 81 - 100 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 103289 0.66 0.999865
Target:  5'- cUGGCcucGGCCGACCU-CGu--GCGcuACg -3'
miRNA:   3'- -ACUG---UCGGCUGGAaGCuuuUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 108366 0.68 0.99774
Target:  5'- gGAguGCUGGCCa--GGAGAcCGAGACa -3'
miRNA:   3'- aCUguCGGCUGGaagCUUUU-GCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 109323 0.67 0.999586
Target:  5'- -uGCAGCCGGCuCUuccucagcguggcccUCGggGugGGGAa -3'
miRNA:   3'- acUGUCGGCUG-GA---------------AGCuuUugCUUUg -5'
28894 3' -47.7 NC_006146.1 + 109606 0.7 0.993974
Target:  5'- gGACGGCCagGGCCUUgGucuuGAAGCGGAGa -3'
miRNA:   3'- aCUGUCGG--CUGGAAgC----UUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 110234 0.69 0.997306
Target:  5'- cGGCAGCCGccACCUU-Guc-ACGAAGCc -3'
miRNA:   3'- aCUGUCGGC--UGGAAgCuuuUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 112055 0.67 0.999639
Target:  5'- gGGCuGCCGGCCUU-GAcgGCGcaguuGACg -3'
miRNA:   3'- aCUGuCGGCUGGAAgCUuuUGCu----UUG- -5'
28894 3' -47.7 NC_006146.1 + 112578 0.66 0.999826
Target:  5'- -uGCAGCUGGCCagggUGGAGuucuccaccccgGCGAAGCg -3'
miRNA:   3'- acUGUCGGCUGGaa--GCUUU------------UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 113002 0.67 0.999134
Target:  5'- gUGACGGaCuCGGCCUU-GAGgcGAUGGAGCa -3'
miRNA:   3'- -ACUGUC-G-GCUGGAAgCUU--UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 115697 0.67 0.999134
Target:  5'- aGGCGGCCGACa---GGAGACGc--- -3'
miRNA:   3'- aCUGUCGGCUGgaagCUUUUGCuuug -5'
28894 3' -47.7 NC_006146.1 + 116872 0.66 0.999715
Target:  5'- cGACauGGCCGcCCUcCGGAGGCGccACc -3'
miRNA:   3'- aCUG--UCGGCuGGAaGCUUUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 118680 0.67 0.999547
Target:  5'- ----uGCCcgaGGCCUUCGAGAugGAGGa -3'
miRNA:   3'- acuguCGG---CUGGAAGCUUUugCUUUg -5'
28894 3' -47.7 NC_006146.1 + 120504 0.66 0.999776
Target:  5'- cUGGCGGCCGaggacgcgaGCCgcguggaugCGGcgGCGGGACu -3'
miRNA:   3'- -ACUGUCGGC---------UGGaa-------GCUuuUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 122107 0.66 0.999896
Target:  5'- aGGCGGagaCCGggGCCUUCGugaagcuGGugGAGACg -3'
miRNA:   3'- aCUGUC---GGC--UGGAAGCu------UUugCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 122803 0.67 0.999631
Target:  5'- gGGCGGCCGagGCCgcgcugUCGGccgccguGAGCGAGuACg -3'
miRNA:   3'- aCUGUCGGC--UGGa-----AGCU-------UUUGCUU-UG- -5'
28894 3' -47.7 NC_006146.1 + 122956 0.66 0.999715
Target:  5'- -cGCAGCUccuGACCaagaGGGAGCGGGACg -3'
miRNA:   3'- acUGUCGG---CUGGaag-CUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 123306 0.71 0.989403
Target:  5'- cUGGCGGCCG-CCgagUGGAucCGGGACg -3'
miRNA:   3'- -ACUGUCGGCuGGaa-GCUUuuGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 123939 0.71 0.987919
Target:  5'- cGGCGGCCgGGCCggCGAAAuACGcGGGCa -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUUU-UGC-UUUG- -5'
28894 3' -47.7 NC_006146.1 + 128485 0.68 0.998114
Target:  5'- --cCAGCUGcgucucGCCUUCGAGGACGGc-- -3'
miRNA:   3'- acuGUCGGC------UGGAAGCUUUUGCUuug -5'
28894 3' -47.7 NC_006146.1 + 128917 0.66 0.999896
Target:  5'- -cGCAGCUGugCgggUCGAGGcCGGGAa -3'
miRNA:   3'- acUGUCGGCugGa--AGCUUUuGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 129343 0.66 0.999854
Target:  5'- aGGCGGCCGAguggCUUCuaaagagagagccgGAGAGgGAAGCg -3'
miRNA:   3'- aCUGUCGGCUg---GAAG--------------CUUUUgCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.