miRNA display CGI


Results 101 - 120 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 130107 0.66 0.999896
Target:  5'- uUGAC-GCCGGCUUUCucaGAAaccgcGugGAGACc -3'
miRNA:   3'- -ACUGuCGGCUGGAAG---CUU-----UugCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 138130 0.71 0.982492
Target:  5'- aGGCAGCCGGCU----GGAugGggGCa -3'
miRNA:   3'- aCUGUCGGCUGGaagcUUUugCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 141470 0.67 0.999134
Target:  5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3'
miRNA:   3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 141967 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 142456 0.67 0.999639
Target:  5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3'
miRNA:   3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 143705 0.74 0.946716
Target:  5'- cUGGCA-CCGuCCUUUGAGGuACGAAACa -3'
miRNA:   3'- -ACUGUcGGCuGGAAGCUUU-UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 144548 0.67 0.999134
Target:  5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3'
miRNA:   3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 144687 0.72 0.977967
Target:  5'- aGGCGGgCGcCCUUgccUGGAGGCGAGACu -3'
miRNA:   3'- aCUGUCgGCuGGAA---GCUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 145045 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 145534 0.67 0.999639
Target:  5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3'
miRNA:   3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 146342 0.66 0.999771
Target:  5'- aGACugucgcuccucuuGGCCGGCCagaaGAGcGCGAAACc -3'
miRNA:   3'- aCUG-------------UCGGCUGGaag-CUUuUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 146798 0.68 0.998939
Target:  5'- gUGcCAGCCG-CCcUCGAcccgcgucccAGGCGAGGCc -3'
miRNA:   3'- -ACuGUCGGCuGGaAGCU----------UUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 147158 0.68 0.99774
Target:  5'- cGGCAGuuGACCcggCGGcgGCGcAGACc -3'
miRNA:   3'- aCUGUCggCUGGaa-GCUuuUGC-UUUG- -5'
28894 3' -47.7 NC_006146.1 + 147626 0.67 0.999134
Target:  5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3'
miRNA:   3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 147957 0.66 0.999715
Target:  5'- -aGCAGCCGGCCUUCauucccuGGAUGGu-- -3'
miRNA:   3'- acUGUCGGCUGGAAGcu-----UUUGCUuug -5'
28894 3' -47.7 NC_006146.1 + 148123 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 148612 0.67 0.999639
Target:  5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3'
miRNA:   3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 149563 0.66 0.999715
Target:  5'- cGGCAGCC--CCUcCGAGAAUGAc-- -3'
miRNA:   3'- aCUGUCGGcuGGAaGCUUUUGCUuug -5'
28894 3' -47.7 NC_006146.1 + 149840 0.69 0.995571
Target:  5'- gGGCGGCCagGGCC-UCG---GCGAAGCg -3'
miRNA:   3'- aCUGUCGG--CUGGaAGCuuuUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 150489 0.71 0.982492
Target:  5'- cUGGUAGCCGuCCcugUCGGAGGCGGAGg -3'
miRNA:   3'- -ACUGUCGGCuGGa--AGCUUUUGCUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.