miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 55764 0.68 0.998434
Target:  5'- cGGCGGCgGGCCa--GggGcaGCGAGGCc -3'
miRNA:   3'- aCUGUCGgCUGGaagCuuU--UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 67043 0.7 0.994822
Target:  5'- cGACAGUCGGCCgggaCGGAGACc---- -3'
miRNA:   3'- aCUGUCGGCUGGaa--GCUUUUGcuuug -5'
28894 3' -47.7 NC_006146.1 + 143705 0.74 0.946716
Target:  5'- cUGGCA-CCGuCCUUUGAGGuACGAAACa -3'
miRNA:   3'- -ACUGUcGGCuGGAAGCUUU-UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 66297 0.68 0.998114
Target:  5'- aGAUAGUcgCGGCCaucgUCGGAGACGugguAGCa -3'
miRNA:   3'- aCUGUCG--GCUGGa---AGCUUUUGCu---UUG- -5'
28894 3' -47.7 NC_006146.1 + 51619 0.74 0.942017
Target:  5'- gGACAGCCGGCUgaggUUGAGGGacggugacuacCGGAGCa -3'
miRNA:   3'- aCUGUCGGCUGGa---AGCUUUU-----------GCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 53193 0.66 0.999776
Target:  5'- cGGCc-CCGGCCUUgGggGGCGGc-- -3'
miRNA:   3'- aCUGucGGCUGGAAgCuuUUGCUuug -5'
28894 3' -47.7 NC_006146.1 + 46066 0.73 0.962614
Target:  5'- cGAguGCCauagcugcugcagGGCC-UCGggGGCGAAGCa -3'
miRNA:   3'- aCUguCGG-------------CUGGaAGCuuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 43231 0.66 0.999715
Target:  5'- -uGCAGCgGACCUUUGggGugccuCGgcGCc -3'
miRNA:   3'- acUGUCGgCUGGAAGCuuUu----GCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 59977 0.67 0.999639
Target:  5'- aGuCAGCCGACCUggGGGucAugGAGuGCa -3'
miRNA:   3'- aCuGUCGGCUGGAagCUU--UugCUU-UG- -5'
28894 3' -47.7 NC_006146.1 + 80719 0.67 0.999298
Target:  5'- gGGCGGCCGAgaUUCGGAcuCGcAGAUg -3'
miRNA:   3'- aCUGUCGGCUggAAGCUUuuGC-UUUG- -5'
28894 3' -47.7 NC_006146.1 + 26865 0.67 0.999298
Target:  5'- aUGGCGGCCcugGACCca-GGAAACGGGu- -3'
miRNA:   3'- -ACUGUCGG---CUGGaagCUUUUGCUUug -5'
28894 3' -47.7 NC_006146.1 + 14553 0.67 0.999298
Target:  5'- aUGGCGGCCcugGACCca-GGAAACGGGu- -3'
miRNA:   3'- -ACUGUCGG---CUGGaagCUUUUGCUUug -5'
28894 3' -47.7 NC_006146.1 + 146798 0.68 0.998939
Target:  5'- gUGcCAGCCG-CCcUCGAcccgcgucccAGGCGAGGCc -3'
miRNA:   3'- -ACuGUCGGCuGGaAGCU----------UUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 53115 0.68 0.99774
Target:  5'- aGGCGGcCCGGCCcggGGGAGCGcGACg -3'
miRNA:   3'- aCUGUC-GGCUGGaagCUUUUGCuUUG- -5'
28894 3' -47.7 NC_006146.1 + 46785 0.69 0.997306
Target:  5'- aUGGCuGGCCGGCCggcgCGAGGGCa---- -3'
miRNA:   3'- -ACUG-UCGGCUGGaa--GCUUUUGcuuug -5'
28894 3' -47.7 NC_006146.1 + 18993 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 52500 0.69 0.996805
Target:  5'- cGACGGCCGAguuggagaUCUgggcgggaaaGAGGACGAGGCc -3'
miRNA:   3'- aCUGUCGGCU--------GGAag--------CUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 40007 0.7 0.990741
Target:  5'- cGGCAGCCuuuGACCggUC--AGACGggGCa -3'
miRNA:   3'- aCUGUCGG---CUGGa-AGcuUUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 90270 0.71 0.987919
Target:  5'- aGGCAGUagagguagaGGCCguggUCGAGGACGAGGa -3'
miRNA:   3'- aCUGUCGg--------CUGGa---AGCUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 55474 0.72 0.980326
Target:  5'- cGAUGGCCG-CgggCGAGAACGAGGCc -3'
miRNA:   3'- aCUGUCGGCuGgaaGCUUUUGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.