miRNA display CGI


Results 81 - 100 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 25421 0.66 0.999776
Target:  5'- gGACAcGCCgGACCU---GAAACGAGAg -3'
miRNA:   3'- aCUGU-CGG-CUGGAagcUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 32016 0.66 0.999826
Target:  5'- gGACAGaggGGCC-UCG-GGACGAGGCg -3'
miRNA:   3'- aCUGUCgg-CUGGaAGCuUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 168905 0.66 0.999858
Target:  5'- -cGCAGCgCGACUgucagcagguucUCGGAGACGAGGg -3'
miRNA:   3'- acUGUCG-GCUGGa-----------AGCUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 50717 0.66 0.999865
Target:  5'- cUGAaAGCCGGCgUugagCGggGGCGAcggGGCg -3'
miRNA:   3'- -ACUgUCGGCUGgAa---GCuuUUGCU---UUG- -5'
28894 3' -47.7 NC_006146.1 + 157357 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 108366 0.68 0.99774
Target:  5'- gGAguGCUGGCCa--GGAGAcCGAGACa -3'
miRNA:   3'- aCUguCGGCUGGaagCUUUU-GCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 154279 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 123939 0.71 0.987919
Target:  5'- cGGCGGCCgGGCCggCGAAAuACGcGGGCa -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUUU-UGC-UUUG- -5'
28894 3' -47.7 NC_006146.1 + 123306 0.71 0.989403
Target:  5'- cUGGCGGCCG-CCgagUGGAucCGGGACg -3'
miRNA:   3'- -ACUGUCGGCuGGaa-GCUUuuGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 80053 0.7 0.990741
Target:  5'- aUGGCAGCCGuCCUagaggCGuAAGGCGgcACu -3'
miRNA:   3'- -ACUGUCGGCuGGAa----GC-UUUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 41054 0.7 0.991943
Target:  5'- cGGCGGCCcugggGGCCU-CGggGugGAGGg -3'
miRNA:   3'- aCUGUCGG-----CUGGAaGCuuUugCUUUg -5'
28894 3' -47.7 NC_006146.1 + 62359 0.7 0.993017
Target:  5'- aGAUAGCC-ACCcgcuguaCGAGGACGggGCc -3'
miRNA:   3'- aCUGUCGGcUGGaa-----GCUUUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 109606 0.7 0.993974
Target:  5'- gGACGGCCagGGCCUUgGucuuGAAGCGGAGa -3'
miRNA:   3'- aCUGUCGG--CUGGAAgC----UUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 19419 0.69 0.997306
Target:  5'- cGGguGCCaGAUCUUCGAAgccAACGuGGACg -3'
miRNA:   3'- aCUguCGG-CUGGAAGCUU---UUGC-UUUG- -5'
28894 3' -47.7 NC_006146.1 + 110234 0.69 0.997306
Target:  5'- cGGCAGCCGccACCUU-Guc-ACGAAGCc -3'
miRNA:   3'- aCUGUCGGC--UGGAAgCuuuUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 47626 0.68 0.99774
Target:  5'- cGGCAGCCacgugGugCUaCGGGAGCuGAGGCu -3'
miRNA:   3'- aCUGUCGG-----CugGAaGCUUUUG-CUUUG- -5'
28894 3' -47.7 NC_006146.1 + 141967 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 145045 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 148123 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 151201 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.