Results 101 - 120 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 123939 | 0.71 | 0.987919 |
Target: 5'- cGGCGGCCgGGCCggCGAAAuACGcGGGCa -3' miRNA: 3'- aCUGUCGG-CUGGaaGCUUU-UGC-UUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 19419 | 0.69 | 0.997306 |
Target: 5'- cGGguGCCaGAUCUUCGAAgccAACGuGGACg -3' miRNA: 3'- aCUguCGG-CUGGAAGCUU---UUGC-UUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 80053 | 0.7 | 0.990741 |
Target: 5'- aUGGCAGCCGuCCUagaggCGuAAGGCGgcACu -3' miRNA: 3'- -ACUGUCGGCuGGAa----GC-UUUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 41054 | 0.7 | 0.991943 |
Target: 5'- cGGCGGCCcugggGGCCU-CGggGugGAGGg -3' miRNA: 3'- aCUGUCGG-----CUGGAaGCuuUugCUUUg -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 62359 | 0.7 | 0.993017 |
Target: 5'- aGAUAGCC-ACCcgcuguaCGAGGACGggGCc -3' miRNA: 3'- aCUGUCGGcUGGaa-----GCUUUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 108366 | 0.68 | 0.99774 |
Target: 5'- gGAguGCUGGCCa--GGAGAcCGAGACa -3' miRNA: 3'- aCUguCGGCUGGaagCUUUU-GCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 27157 | 1.12 | 0.014189 |
Target: 5'- cUGACAGCCGACCUUCGAAAACGAAACa -3' miRNA: 3'- -ACUGUCGGCUGGAAGCUUUUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 157357 | 0.68 | 0.99774 |
Target: 5'- ---uGGCCGGgCgggCGggGACGggGCu -3' miRNA: 3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 3567 | 0.67 | 0.999298 |
Target: 5'- -uGCAGCCGAgCgu-GAcGACGGGACg -3' miRNA: 3'- acUGUCGGCUgGaagCUuUUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 141470 | 0.67 | 0.999134 |
Target: 5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3' miRNA: 3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 153781 | 0.67 | 0.999134 |
Target: 5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3' miRNA: 3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 150703 | 0.67 | 0.999134 |
Target: 5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3' miRNA: 3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 147626 | 0.67 | 0.999134 |
Target: 5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3' miRNA: 3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 144548 | 0.67 | 0.999134 |
Target: 5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3' miRNA: 3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 115697 | 0.67 | 0.999134 |
Target: 5'- aGGCGGCCGACa---GGAGACGc--- -3' miRNA: 3'- aCUGUCGGCUGgaagCUUUUGCuuug -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 113002 | 0.67 | 0.999134 |
Target: 5'- gUGACGGaCuCGGCCUU-GAGgcGAUGGAGCa -3' miRNA: 3'- -ACUGUC-G-GCUGGAAgCUU--UUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 19617 | 0.67 | 0.999134 |
Target: 5'- -cACGGCCcuGGCCUUCGAuauCGAGu- -3' miRNA: 3'- acUGUCGG--CUGGAAGCUuuuGCUUug -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 10456 | 0.67 | 0.999134 |
Target: 5'- cGAgAGCgCcGCCUUCGuGAugGggGCc -3' miRNA: 3'- aCUgUCG-GcUGGAAGCuUUugCuuUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 54665 | 0.68 | 0.997896 |
Target: 5'- -aGCAGCUGGCCc-CGAAucccgccgacaagcgGACGGAGCa -3' miRNA: 3'- acUGUCGGCUGGaaGCUU---------------UUGCUUUG- -5' |
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28894 | 3' | -47.7 | NC_006146.1 | + | 86455 | 0.68 | 0.998114 |
Target: 5'- gGGCAGCUGGgCUUUGAGGGgGcAGCc -3' miRNA: 3'- aCUGUCGGCUgGAAGCUUUUgCuUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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