miRNA display CGI


Results 121 - 140 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 75809 0.75 0.908298
Target:  5'- gGGC-GCCG-CCUUCGAGGcccuGCGGGACa -3'
miRNA:   3'- aCUGuCGGCuGGAAGCUUU----UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 18649 0.75 0.922925
Target:  5'- aGGCAGCCagggaucgcaugcccGGCCUUCGcAGGCGAcGCu -3'
miRNA:   3'- aCUGUCGG---------------CUGGAAGCuUUUGCUuUG- -5'
28894 3' -47.7 NC_006146.1 + 42411 0.8 0.693952
Target:  5'- cGAC-GCCGuCC-UCGAAGGCGAGACg -3'
miRNA:   3'- aCUGuCGGCuGGaAGCUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 110234 0.69 0.997306
Target:  5'- cGGCAGCCGccACCUU-Guc-ACGAAGCc -3'
miRNA:   3'- aCUGUCGGC--UGGAAgCuuuUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 141967 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 147626 0.67 0.999134
Target:  5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3'
miRNA:   3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 144548 0.67 0.999134
Target:  5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3'
miRNA:   3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 141470 0.67 0.999134
Target:  5'- gGAgGGCCuGGCCUgCGGgggacaggguGGACGggGCu -3'
miRNA:   3'- aCUgUCGG-CUGGAaGCU----------UUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 115697 0.67 0.999134
Target:  5'- aGGCGGCCGACa---GGAGACGc--- -3'
miRNA:   3'- aCUGUCGGCUGgaagCUUUUGCuuug -5'
28894 3' -47.7 NC_006146.1 + 113002 0.67 0.999134
Target:  5'- gUGACGGaCuCGGCCUU-GAGgcGAUGGAGCa -3'
miRNA:   3'- -ACUGUC-G-GCUGGAAgCUU--UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 19617 0.67 0.999134
Target:  5'- -cACGGCCcuGGCCUUCGAuauCGAGu- -3'
miRNA:   3'- acUGUCGG--CUGGAAGCUuuuGCUUug -5'
28894 3' -47.7 NC_006146.1 + 10456 0.67 0.999134
Target:  5'- cGAgAGCgCcGCCUUCGuGAugGggGCc -3'
miRNA:   3'- aCUgUCG-GcUGGAAGCuUUugCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 86455 0.68 0.998114
Target:  5'- gGGCAGCUGGgCUUUGAGGGgGcAGCc -3'
miRNA:   3'- aCUGUCGGCUgGAAGCUUUUgCuUUG- -5'
28894 3' -47.7 NC_006146.1 + 54665 0.68 0.997896
Target:  5'- -aGCAGCUGGCCc-CGAAucccgccgacaagcgGACGGAGCa -3'
miRNA:   3'- acUGUCGGCUGGaaGCUU---------------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 157357 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 108366 0.68 0.99774
Target:  5'- gGAguGCUGGCCa--GGAGAcCGAGACa -3'
miRNA:   3'- aCUguCGGCUGGaagCUUUU-GCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 154279 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 151201 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 148123 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 145045 0.68 0.99774
Target:  5'- ---uGGCCGGgCgggCGggGACGggGCu -3'
miRNA:   3'- acugUCGGCUgGaa-GCuuUUGCuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.