Results 41 - 60 of 141 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 50717 | 0.66 | 0.999865 |
Target: 5'- cUGAaAGCCGGCgUugagCGggGGCGAcggGGCg -3' miRNA: 3'- -ACUgUCGGCUGgAa---GCuuUUGCU---UUG- -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 103289 | 0.66 | 0.999865 |
Target: 5'- cUGGCcucGGCCGACCU-CGu--GCGcuACg -3' miRNA: 3'- -ACUG---UCGGCUGGAaGCuuuUGCuuUG- -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 69280 | 0.66 | 0.999865 |
Target: 5'- cGGCGGCCGuuGCCaccgCGuaAAGACGAGGa -3' miRNA: 3'- aCUGUCGGC--UGGaa--GC--UUUUGCUUUg -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 128917 | 0.66 | 0.999896 |
Target: 5'- -cGCAGCUGugCgggUCGAGGcCGGGAa -3' miRNA: 3'- acUGUCGGCugGa--AGCUUUuGCUUUg -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 67952 | 0.66 | 0.999896 |
Target: 5'- gGGCGGCUGcCCUcgGAGGGCGAc-- -3' miRNA: 3'- aCUGUCGGCuGGAagCUUUUGCUuug -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 44353 | 0.66 | 0.999776 |
Target: 5'- gUGACcGCgGGCCc-CGggGGCaGAGACa -3' miRNA: 3'- -ACUGuCGgCUGGaaGCuuUUG-CUUUG- -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 120504 | 0.66 | 0.999776 |
Target: 5'- cUGGCGGCCGaggacgcgaGCCgcguggaugCGGcgGCGGGACu -3' miRNA: 3'- -ACUGUCGGC---------UGGaa-------GCUuuUGCUUUG- -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 15598 | 0.67 | 0.999434 |
Target: 5'- cGAgGGCgCGGCCUUUGAGAAUu---- -3' miRNA: 3'- aCUgUCG-GCUGGAAGCUUUUGcuuug -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 166523 | 0.67 | 0.999434 |
Target: 5'- aUGGC-GUCGGCCUggGGAGcccGCGggGCc -3' miRNA: 3'- -ACUGuCGGCUGGAagCUUU---UGCuuUG- -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 9904 | 0.67 | 0.999547 |
Target: 5'- gUGACGGCCaGGCaggaGgcGACGGAGCc -3' miRNA: 3'- -ACUGUCGG-CUGgaagCuuUUGCUUUG- -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 118680 | 0.67 | 0.999547 |
Target: 5'- ----uGCCcgaGGCCUUCGAGAugGAGGa -3' miRNA: 3'- acuguCGG---CUGGAAGCUUUugCUUUg -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 122803 | 0.67 | 0.999631 |
Target: 5'- gGGCGGCCGagGCCgcgcugUCGGccgccguGAGCGAGuACg -3' miRNA: 3'- aCUGUCGGC--UGGa-----AGCU-------UUUGCUU-UG- -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 112055 | 0.67 | 0.999639 |
Target: 5'- gGGCuGCCGGCCUU-GAcgGCGcaguuGACg -3' miRNA: 3'- aCUGuCGGCUGGAAgCUuuUGCu----UUG- -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 142456 | 0.67 | 0.999639 |
Target: 5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3' miRNA: 3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 145534 | 0.67 | 0.999639 |
Target: 5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3' miRNA: 3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 148612 | 0.67 | 0.999639 |
Target: 5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3' miRNA: 3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 154767 | 0.67 | 0.999639 |
Target: 5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3' miRNA: 3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 157845 | 0.67 | 0.999639 |
Target: 5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3' miRNA: 3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 122956 | 0.66 | 0.999715 |
Target: 5'- -cGCAGCUccuGACCaagaGGGAGCGGGACg -3' miRNA: 3'- acUGUCGG---CUGGaag-CUUUUGCUUUG- -5' |
|||||||
28894 | 3' | -47.7 | NC_006146.1 | + | 116872 | 0.66 | 0.999715 |
Target: 5'- cGACauGGCCGcCCUcCGGAGGCGccACc -3' miRNA: 3'- aCUG--UCGGCuGGAaGCUUUUGCuuUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home