miRNA display CGI


Results 61 - 80 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 3567 0.67 0.999298
Target:  5'- -uGCAGCCGAgCgu-GAcGACGGGACg -3'
miRNA:   3'- acUGUCGGCUgGaagCUuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 21028 0.67 0.999434
Target:  5'- cGAguGCCGGggauUCUcgGAGGGCGAGACg -3'
miRNA:   3'- aCUguCGGCU----GGAagCUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 15598 0.67 0.999434
Target:  5'- cGAgGGCgCGGCCUUUGAGAAUu---- -3'
miRNA:   3'- aCUgUCG-GCUGGAAGCUUUUGcuuug -5'
28894 3' -47.7 NC_006146.1 + 166523 0.67 0.999434
Target:  5'- aUGGC-GUCGGCCUggGGAGcccGCGggGCc -3'
miRNA:   3'- -ACUGuCGGCUGGAagCUUU---UGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 9904 0.67 0.999547
Target:  5'- gUGACGGCCaGGCaggaGgcGACGGAGCc -3'
miRNA:   3'- -ACUGUCGG-CUGgaagCuuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 154767 0.67 0.999639
Target:  5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3'
miRNA:   3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 148612 0.67 0.999639
Target:  5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3'
miRNA:   3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 145534 0.67 0.999639
Target:  5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3'
miRNA:   3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 142456 0.67 0.999639
Target:  5'- gGGCGGCCG-CCUUgGGGccCGGAGu -3'
miRNA:   3'- aCUGUCGGCuGGAAgCUUuuGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 112055 0.67 0.999639
Target:  5'- gGGCuGCCGGCCUU-GAcgGCGcaguuGACg -3'
miRNA:   3'- aCUGuCGGCUGGAAgCUuuUGCu----UUG- -5'
28894 3' -47.7 NC_006146.1 + 122803 0.67 0.999631
Target:  5'- gGGCGGCCGagGCCgcgcugUCGGccgccguGAGCGAGuACg -3'
miRNA:   3'- aCUGUCGGC--UGGa-----AGCU-------UUUGCUU-UG- -5'
28894 3' -47.7 NC_006146.1 + 118680 0.67 0.999547
Target:  5'- ----uGCCcgaGGCCUUCGAGAugGAGGa -3'
miRNA:   3'- acuguCGG---CUGGAAGCUUUugCUUUg -5'
28894 3' -47.7 NC_006146.1 + 55474 0.72 0.980326
Target:  5'- cGAUGGCCG-CgggCGAGAACGAGGCc -3'
miRNA:   3'- aCUGUCGGCuGgaaGCUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 85591 0.73 0.966089
Target:  5'- aGGCAGCCGcCCgccUCGGAAGCuggcaccGggGCa -3'
miRNA:   3'- aCUGUCGGCuGGa--AGCUUUUG-------CuuUG- -5'
28894 3' -47.7 NC_006146.1 + 1501 0.73 0.962972
Target:  5'- aUGGCAGCCGGCCU-CGuuuGggUGguGCu -3'
miRNA:   3'- -ACUGUCGGCUGGAaGCu--UuuGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 46066 0.73 0.962614
Target:  5'- cGAguGCCauagcugcugcagGGCC-UCGggGGCGAAGCa -3'
miRNA:   3'- aCUguCGG-------------CUGGaAGCuuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 45821 0.74 0.946716
Target:  5'- -cACGGCCG-CC-UCGAAGACGGAGa -3'
miRNA:   3'- acUGUCGGCuGGaAGCUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 143705 0.74 0.946716
Target:  5'- cUGGCA-CCGuCCUUUGAGGuACGAAACa -3'
miRNA:   3'- -ACUGUcGGCuGGAAGCUUU-UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 51619 0.74 0.942017
Target:  5'- gGACAGCCGGCUgaggUUGAGGGacggugacuacCGGAGCa -3'
miRNA:   3'- aCUGUCGGCUGGa---AGCUUUU-----------GCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 130107 0.66 0.999896
Target:  5'- uUGAC-GCCGGCUUUCucaGAAaccgcGugGAGACc -3'
miRNA:   3'- -ACUGuCGGCUGGAAG---CUU-----UugCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.