miRNA display CGI


Results 81 - 100 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28894 3' -47.7 NC_006146.1 + 25149 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 28227 0.69 0.997306
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccugGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 46785 0.69 0.997306
Target:  5'- aUGGCuGGCCGGCCggcgCGAGGGCa---- -3'
miRNA:   3'- -ACUG-UCGGCUGGaa--GCUUUUGcuuug -5'
28894 3' -47.7 NC_006146.1 + 86370 0.68 0.99774
Target:  5'- cGuCAGCUGGCCggUCuuGGAUGAGACc -3'
miRNA:   3'- aCuGUCGGCUGGa-AGcuUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 12837 0.68 0.99774
Target:  5'- cGGCGGCCgGACC--CGAGgaggcgccuggGGCGAGGCu -3'
miRNA:   3'- aCUGUCGG-CUGGaaGCUU-----------UUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 56802 0.7 0.990741
Target:  5'- cGGCGGCCGuCUggCGG--GCGggGCu -3'
miRNA:   3'- aCUGUCGGCuGGaaGCUuuUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 40007 0.7 0.990741
Target:  5'- cGGCAGCCuuuGACCggUC--AGACGggGCa -3'
miRNA:   3'- aCUGUCGG---CUGGa-AGcuUUUGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 2497 0.71 0.989403
Target:  5'- aGGCAGCUGGCCgaCGAGcuGAUGAu-- -3'
miRNA:   3'- aCUGUCGGCUGGaaGCUU--UUGCUuug -5'
28894 3' -47.7 NC_006146.1 + 51619 0.74 0.942017
Target:  5'- gGACAGCCGGCUgaggUUGAGGGacggugacuacCGGAGCa -3'
miRNA:   3'- aCUGUCGGCUGGa---AGCUUUU-----------GCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 143705 0.74 0.946716
Target:  5'- cUGGCA-CCGuCCUUUGAGGuACGAAACa -3'
miRNA:   3'- -ACUGUcGGCuGGAAGCUUU-UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 45821 0.74 0.946716
Target:  5'- -cACGGCCG-CC-UCGAAGACGGAGa -3'
miRNA:   3'- acUGUCGGCuGGaAGCUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 46066 0.73 0.962614
Target:  5'- cGAguGCCauagcugcugcagGGCC-UCGggGGCGAAGCa -3'
miRNA:   3'- aCUguCGG-------------CUGGaAGCuuUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 1501 0.73 0.962972
Target:  5'- aUGGCAGCCGGCCU-CGuuuGggUGguGCu -3'
miRNA:   3'- -ACUGUCGGCUGGAaGCu--UuuGCuuUG- -5'
28894 3' -47.7 NC_006146.1 + 85591 0.73 0.966089
Target:  5'- aGGCAGCCGcCCgccUCGGAAGCuggcaccGggGCa -3'
miRNA:   3'- aCUGUCGGCuGGa--AGCUUUUG-------CuuUG- -5'
28894 3' -47.7 NC_006146.1 + 55474 0.72 0.980326
Target:  5'- cGAUGGCCG-CgggCGAGAACGAGGCc -3'
miRNA:   3'- aCUGUCGGCuGgaaGCUUUUGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 150489 0.71 0.982492
Target:  5'- cUGGUAGCCGuCCcugUCGGAGGCGGAGg -3'
miRNA:   3'- -ACUGUCGGCuGGa--AGCUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 94646 0.71 0.984473
Target:  5'- aUGAUGGCCGcCCUggGGAccACGAAGCg -3'
miRNA:   3'- -ACUGUCGGCuGGAagCUUu-UGCUUUG- -5'
28894 3' -47.7 NC_006146.1 + 68875 0.71 0.986279
Target:  5'- cGACAGCCuGGCCcugaUgGAGAugGAGAa -3'
miRNA:   3'- aCUGUCGG-CUGGa---AgCUUUugCUUUg -5'
28894 3' -47.7 NC_006146.1 + 90270 0.71 0.987919
Target:  5'- aGGCAGUagagguagaGGCCguggUCGAGGACGAGGa -3'
miRNA:   3'- aCUGUCGg--------CUGGa---AGCUUUUGCUUUg -5'
28894 3' -47.7 NC_006146.1 + 36306 0.71 0.988828
Target:  5'- aGGCGGCUGGCCUUCuuuacugaGggGCa -3'
miRNA:   3'- aCUGUCGGCUGGAAGcuuuug--CuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.